Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 9.6e-47 189.9 101 100.0
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 9.3e-34 146.7 101 79.2
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.5e-33 144.8 101 72.3
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 3.5e-33 144.8 99 74.7
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 1.8e-32 142.5 101 71.3
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 3.9e-32 141.4 101 74.3
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 6.7e-32 140.6 100 67.0
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 1.1e-31 139.8 101 74.3
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 97 73.2
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.1e-31 139.8 97 73.2
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 1.5e-31 139.4 101 69.3
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 1.5e-31 139.4 97 73.2
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 1.9e-31 139.0 101 72.3
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.5e-31 138.7 101 70.3
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 4.3e-31 137.9 101 71.3
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 4.3e-31 137.9 101 68.3
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 5.7e-31 137.5 101 68.3
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 5.7e-31 137.5 101 66.3
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 5.7e-31 137.5 101 69.3
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 5.7e-31 137.5 100 77.0
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 5.7e-31 137.5 100 70.0
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 7.4e-31 137.1 97 70.1
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 7.4e-31 137.1 101 72.3
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 7.4e-31 137.1 101 76.2
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 9.7e-31 136.7 99 69.7
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.3e-30 136.3 99 67.7
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.3e-30 136.3 99 67.7
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 1.3e-30 136.3 99 69.7
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.3e-30 136.3 97 66.0
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.3e-30 136.3 97 66.0
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.3e-30 136.3 101 69.3
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 1.6e-30 136.0 99 66.7
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.6e-30 136.0 101 74.3
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 1.6e-30 136.0 100 69.0
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 2.2e-30 135.6 97 72.2
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.8e-30 135.2 85 84.7
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.8e-30 135.2 85 84.7
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 2.8e-30 135.2 100 67.0
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 3.7e-30 134.8 99 71.7
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.7e-30 134.8 97 68.0
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 3.7e-30 134.8 97 68.0
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 4.8e-30 134.4 101 65.3
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 4.8e-30 134.4 99 66.7
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 8.2e-30 133.7 100 68.0
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.1e-29 133.3 100 67.0
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.1e-29 133.3 103 67.0
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 1.8e-29 132.5 99 67.7
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.8e-29 132.5 97 68.0
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.8e-29 132.5 98 67.3
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 2.4e-29 132.1 101 77.2
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 2.4e-29 132.1 99 64.6
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 2.4e-29 132.1 100 67.0
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 4.1e-29 131.3 97 64.9
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 6.9e-29 130.6 101 74.3
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 9.0e-29 130.2 98 66.3
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 1.2e-28 129.8 98 73.5
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.2e-28 129.8 101 67.3
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.0e-28 129.0 98 65.3
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.0e-28 129.0 98 65.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 2.0e-28 129.0 102 65.7
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 2.6e-28 128.6 95 66.3
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 2.6e-28 128.6 99 62.6
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 2.6e-28 128.6 99 62.6
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 2.6e-28 128.6 99 62.6
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 2.6e-28 128.6 101 70.3
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.6e-28 128.6 98 73.5
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 2.6e-28 128.6 101 70.3
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.6e-28 128.6 98 65.3
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.6e-28 128.6 98 65.3
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 3.4e-28 128.3 99 62.6
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 3.4e-28 128.3 99 62.6
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 3.4e-28 128.3 99 62.6
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 3.4e-28 128.3 99 62.6
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 3.4e-28 128.3 99 62.6
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 3.4e-28 128.3 100 66.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 4.5e-28 127.9 99 62.6
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 5.9e-28 127.5 101 68.3
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 5.9e-28 127.5 101 67.3
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 7.7e-28 127.1 90 76.7
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 7.7e-28 127.1 99 66.7
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.7e-27 125.9 101 66.3
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.7e-27 125.9 101 67.3
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.7e-27 125.9 97 66.0
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 1.7e-27 125.9 103 61.2
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.2e-27 125.6 98 72.4
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 2.9e-27 125.2 99 60.6
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 5.0e-27 124.4 99 69.7
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 6.5e-27 124.0 97 64.9
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 6.5e-27 124.0 97 64.9
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 6.5e-27 124.0 100 65.0
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 1.1e-26 123.2 98 62.2
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.4e-26 122.9 97 67.0
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.9e-26 122.5 95 62.1
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 1.9e-26 122.5 101 63.4
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 2.5e-26 122.1 95 73.7
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 7.2e-26 120.6 97 66.0
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 9.4e-26 120.2 101 64.4
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 1.2e-25 119.8 101 64.4
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 1.2e-25 119.8 86 65.1
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.7e-25 118.6 97 66.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 1.4e-24 116.3 101 68.3
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 1.8e-24 115.9 103 66.0
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 3.0e-24 115.2 94 73.4
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 5.7e-23 110.9 98 54.1
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 1.7e-22 109.4 95 61.1
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.8e-22 108.6 97 58.8
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.8e-21 105.9 97 57.7
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 3.1e-21 105.1 82 62.2
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 5.3e-21 104.4 95 66.3
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.0e-20 102.4 91 58.2
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 1.7e-19 99.4 94 53.2
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 5.0e-19 97.8 81 59.3
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.6e-17 92.8 96 45.8
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 3.6e-17 91.7 96 45.8
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.1e-17 90.9 94 46.8
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 7.9e-17 90.5 66 68.2
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 5.1e-16 87.8 79 62.0
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.1e-16 87.8 99 42.4
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.7e-16 87.4 96 41.7
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 8.8e-16 87.0 101 53.5
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 4.4e-15 84.7 93 49.5
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 9.7e-15 83.6 92 50.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 7.0e-13 77.4 100 51.0
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 7.0e-13 77.4 86 54.7
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 1.6e-12 76.3 91 54.9
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 1.4e-08 63.2 85 40.0
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 9.7e-07 57.0 39 66.7


User provided reference genes

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