Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.4e-213 746.1 399 100.0
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.8e-136 488.0 408 71.3
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.3e-123 447.2 283 87.6
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.2e-120 435.3 283 84.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.2e-118 429.9 361 70.9
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.9e-118 429.5 329 77.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 8.3e-118 427.9 285 84.2
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 8.3e-118 427.9 285 83.5
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.1e-117 425.6 283 84.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.7e-116 422.9 318 76.1
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 3.5e-116 422.5 241 84.6
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 4.6e-116 422.2 369 68.3
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 7.8e-116 421.4 283 82.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.8e-116 421.4 284 83.1
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.8e-116 421.4 285 82.5
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.0e-115 421.0 293 80.5
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 5.0e-115 418.7 283 82.7
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-114 417.5 285 81.8
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.1e-114 417.5 287 81.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.3e-114 415.6 286 82.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.6e-114 415.2 285 82.5
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 7.3e-114 414.8 283 81.3
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 9.5e-114 414.5 285 82.5
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.8e-113 412.9 283 80.9
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.6e-113 412.5 332 73.8
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.7e-113 412.1 238 83.2
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.0e-113 411.4 283 81.6
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.8e-112 410.2 283 80.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.5e-111 407.1 285 80.4
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 2.6e-111 406.4 285 80.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 3.4e-111 406.0 230 84.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 7.5e-111 404.8 285 80.0
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 7.5e-111 404.8 285 80.0
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.7e-110 403.7 421 61.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 2.2e-110 403.3 285 80.0
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 3.7e-110 402.5 285 79.6
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.9e-110 402.1 296 77.4
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.9e-110 402.1 285 80.0
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-109 400.2 298 76.8
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.9e-109 400.2 284 80.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.2e-109 399.4 285 79.6
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.2e-109 399.4 325 72.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.1e-109 399.1 240 78.8
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 9.2e-109 397.9 221 86.0
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-108 397.1 285 78.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.5e-108 396.0 239 79.1
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.5e-108 396.0 239 79.1
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.0e-108 395.2 285 77.9
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.8e-108 394.8 285 77.5
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-107 394.4 285 78.2
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.3e-107 394.0 282 79.8
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.3e-107 394.0 283 79.2
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.3e-107 393.3 283 79.2
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.0e-107 392.9 295 74.9
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.0e-107 392.1 285 77.9
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 6.6e-107 391.7 284 79.6
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 6.6e-107 391.7 378 65.1
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 8.6e-107 391.3 284 79.2
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.5e-106 389.8 286 78.3
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.5e-106 389.8 287 79.4
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 9.5e-106 387.9 281 78.6
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 2.1e-105 386.7 287 77.0
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.8e-105 386.3 285 78.2
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 2.8e-105 386.3 286 77.3
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.7e-105 385.6 289 76.1
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.7e-105 385.6 286 79.0
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 6.2e-105 385.2 241 77.2
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 6.2e-105 385.2 287 78.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 8.1e-105 384.8 239 75.7
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.5e-103 380.6 375 64.0
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 9.8e-103 377.9 244 75.4
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-102 377.5 285 77.2
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.9e-102 376.3 303 72.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 6.4e-102 375.2 283 76.7
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.4e-101 374.0 285 74.4
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 7.1e-101 371.7 242 74.4
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 7.1e-101 371.7 244 75.4
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.7e-100 369.8 243 74.1
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 6.0e-100 368.6 241 74.7
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.0e-99 367.9 285 73.0
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-99 367.5 246 73.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.3e-99 367.5 288 74.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 2.3e-99 366.7 246 73.6
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 6.6e-99 365.2 268 79.5
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.5e-98 364.0 210 84.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.9e-98 363.6 287 73.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 2.5e-98 363.2 244 73.4
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.5e-98 363.2 312 70.2
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.3e-98 362.5 240 73.8
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.2e-97 360.9 208 80.3
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 8.1e-97 358.2 284 73.2
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 6.8e-96 355.1 287 73.2
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.5e-95 354.0 285 71.6
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 9.9e-95 351.3 227 88.1
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.3e-94 350.9 223 74.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-94 349.4 285 70.9
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.2e-92 344.4 196 85.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.6e-92 344.0 232 69.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.6e-92 342.4 245 70.6
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.0e-91 341.3 287 71.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.7e-91 340.5 297 70.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.9e-91 339.3 237 69.6
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.1e-90 337.8 283 70.7
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.1e-89 333.6 298 69.8
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 8.1e-89 331.6 287 69.0
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 8.1e-89 331.6 286 71.0
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.4e-88 330.9 248 69.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.4e-88 330.9 244 70.1
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 8.9e-88 328.2 292 70.2
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 5.8e-87 325.5 282 68.8
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 7.6e-87 325.1 292 69.9
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.8e-86 322.8 297 69.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 3.8e-86 322.8 232 68.5
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 9.3e-85 318.2 295 69.2
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.0e-83 314.7 293 68.9
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.7e-83 313.9 248 67.7
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.3e-83 313.5 242 77.3
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 1.5e-82 310.8 230 80.4
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 4.3e-82 309.3 285 66.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 2.4e-80 303.5 230 67.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.8e-78 296.2 285 65.3
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 5.4e-77 292.4 390 52.6
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.9e-75 286.2 198 71.7
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.9e-74 283.9 227 74.9
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 6.9e-72 275.4 245 60.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 5.1e-67 259.2 244 59.8
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 2.1e-65 253.8 217 61.8
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 8.1e-65 251.9 239 59.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.8e-64 250.8 245 56.3
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 4.0e-64 249.6 201 63.7
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 6.3e-57 225.7 247 52.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 7.2e-45 185.7 278 54.0
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 6.1e-44 182.6 154 57.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 3.3e-42 176.8 131 67.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 7.9e-36 155.6 252 38.9
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 8.8e-35 152.1 248 40.7
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.6e-34 150.6 246 38.6
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 5.0e-30 136.3 253 36.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 5.5e-29 132.9 184 46.7
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 7.5e-26 122.5 234 37.6
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.7e-25 121.3 224 37.5
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 1.4e-24 118.2 239 34.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 4.1e-24 116.7 53 100.0
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.7e-23 114.0 225 34.2
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.9e-23 112.8 234 38.0
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.7e-23 112.5 225 34.7
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 2.9e-22 110.5 225 36.9
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.9e-22 110.5 257 31.9
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 2.9e-22 110.5 229 36.2
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.0e-22 109.8 239 35.1
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.2e-21 106.7 235 34.9
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.1e-20 104.4 223 35.4
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.7e-20 103.2 240 32.9
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 3.0e-19 100.5 238 35.3
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 9.8e-18 95.5 70 65.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.8e-17 94.0 250 33.2
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.8e-17 94.0 225 32.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.7e-17 93.6 225 34.7
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.1e-16 90.1 46 87.0
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.7e-15 87.4 52 75.0
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 3.5e-15 87.0 256 30.1
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.0e-14 85.5 244 30.3
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.2e-14 84.3 208 34.6
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.5e-14 82.4 210 31.9
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.2e-13 80.1 103 46.6
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 8.0e-12 75.9 166 33.7
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.4e-10 70.5 161 34.2
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 9.8e-10 68.9 172 28.5
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.3e-09 68.6 251 27.1
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 3.1e-08 63.9 51 52.9
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 4.1e-08 63.5 172 29.7
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.2e-07 62.0 48 54.2
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.6e-07 61.6 51 51.0
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-07 61.6 30 76.7
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 4.5e-07 60.1 154 30.5


User provided reference genes

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