Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 8.6e-204 713.4 347 100.0
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 3.3e-163 578.6 366 80.1
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 4.8e-154 548.1 352 77.6
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.4e-153 546.6 351 77.8
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.2e-151 539.3 349 76.5
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.1e-150 537.0 351 77.5
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 9.3e-150 533.9 352 76.1
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 1.8e-148 529.6 355 75.8
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 3.3e-147 525.4 353 74.2
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.8e-145 519.6 354 73.4
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.4e-145 519.2 357 74.2
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 5.9e-144 514.6 359 71.6
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 6.5e-143 511.1 356 72.5
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 6.5e-143 511.1 356 72.5
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 1.9e-142 509.6 361 70.6
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 3.2e-142 508.8 356 72.2
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 7.2e-142 507.7 353 72.0
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 7.9e-141 504.2 349 71.9
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 7.9e-141 504.2 361 70.4
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 3.0e-140 502.3 347 72.6
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.5e-139 500.0 328 76.2
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 2.0e-139 499.6 347 71.5
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.0e-139 499.6 361 69.8
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.3e-139 498.8 363 70.5
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 1.3e-138 496.9 348 71.3
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 2.2e-138 496.1 358 69.8
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 2.4e-137 492.7 362 70.7
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.4e-137 492.7 354 70.6
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.1e-137 491.9 358 70.9
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 5.3e-137 491.5 355 69.9
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 9.1e-137 490.7 365 69.3
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 2.0e-136 489.6 362 69.9
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.0e-136 489.6 366 68.3
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.0e-136 489.6 366 68.3
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 4.5e-136 488.4 357 68.6
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.5e-136 488.4 362 70.2
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.3e-135 486.9 357 68.6
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.3e-135 486.9 361 69.3
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.3e-135 486.9 360 68.3
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 1.7e-135 486.5 359 69.9
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 2.2e-135 486.1 357 68.9
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 2.2e-135 486.1 356 69.1
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 3.8e-135 485.3 367 67.3
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.0e-135 485.0 367 67.6
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 8.5e-135 484.2 363 68.6
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 2.5e-134 482.6 363 68.6
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 3.2e-134 482.3 364 65.1
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 3.2e-134 482.3 364 69.2
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 4.2e-134 481.9 361 67.3
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 4.2e-134 481.9 364 67.6
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 9.4e-134 480.7 364 69.0
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.2e-133 480.3 365 67.7
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 1.2e-133 480.3 365 67.7
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 3.6e-133 478.8 366 67.2
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 4.7e-133 478.4 368 66.0
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 6.1e-133 478.0 354 68.4
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 7.9e-133 477.6 370 66.5
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 1.0e-132 477.2 360 65.0
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 1.4e-132 476.9 368 67.4
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.4e-132 476.9 362 68.0
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 1.8e-132 476.5 356 68.5
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 3.0e-132 475.7 369 65.3
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 3.0e-132 475.7 358 67.3
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 5.1e-132 474.9 353 68.0
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 5.1e-132 474.9 371 64.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 6.7e-132 474.6 368 65.2
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 6.7e-132 474.6 363 67.8
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 8.8e-132 474.2 369 65.0
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.5e-131 473.4 368 64.1
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 1.5e-131 473.4 360 67.8
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 2.0e-131 473.0 375 66.4
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 2.0e-131 473.0 375 66.4
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 4.4e-131 471.9 358 67.9
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 4.4e-131 471.9 370 65.4
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 7.4e-131 471.1 366 68.0
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 1.3e-130 470.3 369 64.8
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 2.8e-130 469.2 357 67.8
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.7e-130 468.8 369 63.4
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 6.3e-130 468.0 367 65.1
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 8.2e-130 467.6 369 64.5
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 8.2e-130 467.6 369 64.5
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 1.1e-129 467.2 354 67.8
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.8e-129 466.5 361 64.3
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 1.8e-129 466.5 363 68.6
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 2.4e-129 466.1 369 64.2
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 5.3e-129 464.9 357 66.4
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.5e-128 463.4 364 65.7
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 5.5e-126 454.9 440 57.3
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.2e-125 453.8 364 65.1
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 3.9e-124 448.7 360 64.2
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 2.0e-123 446.4 357 64.4
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 7.4e-123 444.5 366 63.1
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.3e-122 443.7 354 63.3
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 1.3e-122 443.7 371 62.0
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 2.2e-122 443.0 374 61.8
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 6.3e-122 441.4 332 67.5
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 8.2e-122 441.0 354 63.3
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 4.5e-120 435.3 370 61.9
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 5.0e-119 431.8 332 67.5
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 7.2e-118 427.9 351 63.0
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 4.7e-117 425.2 330 66.4
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.8e-116 423.3 336 66.4
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 6.8e-116 421.4 362 59.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.5e-115 420.2 365 60.5
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 1.3e-114 417.2 332 69.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 8.5e-111 404.4 349 58.7
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 7.0e-105 384.8 309 61.8
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 1.3e-103 380.6 356 56.7
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.7e-103 380.2 325 61.8
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 1.5e-102 377.1 310 60.6
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.3e-98 364.0 194 87.1
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 3.7e-98 362.5 291 66.0
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 4.9e-98 362.1 194 85.1
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.3e-98 361.7 238 74.4
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.1e-97 360.9 291 66.7
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 1.4e-97 360.5 296 65.5
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 3.2e-97 359.4 194 85.6
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 4.1e-97 359.0 362 54.1
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 4.1e-97 359.0 352 54.8
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.7e-96 356.3 355 54.4
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 1.2e-93 347.4 316 57.9
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 4.7e-93 345.5 311 56.3
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 1.0e-92 344.4 358 49.4
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.4e-92 344.0 347 51.6
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 5.4e-89 332.0 310 52.6
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.2e-69 267.7 153 80.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.6e-69 267.3 207 68.1
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.4e-65 252.3 126 91.3
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 3.9e-55 219.5 210 56.2
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.7e-47 191.8 339 39.8
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.1e-45 187.2 100 84.0
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 3.7e-45 186.4 182 56.6
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.4e-36 157.1 161 57.8
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 1.6e-32 144.4 102 74.5
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 7.9e-32 142.1 154 54.5
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 3.7e-29 133.3 155 50.3
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 4.5e-27 126.3 88 69.3
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 5.9e-27 125.9 73 74.0
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 1.3e-26 124.8 73 72.6
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 8.5e-26 122.1 230 38.3
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.4e-12 77.4 119 38.7
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.2e-11 75.1 43 79.1
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 3.3e-06 57.0 81 49.4


User provided reference genes

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