Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0018700 Rhododendron simsii HOM05D003399 ORTHO05D003393 3.2e-147 525.0 253 100.0
Actinidia22126 Actinidia chinensis HOM05D003399 ORTHO05D003393 8.3e-39 164.9 245 47.8
Cfa009429 Carpinus fangiana HOM05D003399 ORTHO05D003393 3.3e-35 152.9 260 43.5
Manes.08G102600 Manihot esculenta HOM05D003399 ORTHO05D003393 6.2e-34 148.7 255 43.9
Haze_12480 Corylus avellana HOM05D003399 ORTHO05D003393 1.8e-33 147.1 262 41.6
Actinidia30598 Actinidia chinensis HOM05D003399 ORTHO05D003393 3.1e-33 146.4 258 43.4
QL03p050027 Quercus lobata HOM05D003399 ORTHO05D003393 4.0e-33 146.0 280 41.8
CSS0040305 Camellia sinensis var. sinensis HOM05D003399 ORTHO05D006018 5.2e-33 145.6 272 43.0
Duzib052G0315 Durio zibethinus HOM05D003399 ORTHO05D003393 5.2e-33 145.6 247 41.7
Thecc.02G195400 Theobroma cacao HOM05D003399 ORTHO05D003393 1.5e-32 144.1 249 42.6
CiPaw.05G103400 Carya illinoinensis HOM05D003399 ORTHO05D003393 2.0e-32 143.7 285 41.4
Sabra03G0119900 Salix brachista HOM05D003399 ORTHO05D003393 4.4e-32 142.5 300 41.7
TAR622G1322 Trochodendron aralioides HOM05D003399 ORTHO05D003393 4.4e-32 142.5 263 41.1
Duzib248G1620 Durio zibethinus HOM05D003399 ORTHO05D003393 5.8e-32 142.1 283 39.6
Manes.09G186300 Manihot esculenta HOM05D003399 ORTHO05D003393 5.8e-32 142.1 260 42.7
Potri.001G062700 Populus trichocarpa HOM05D003399 ORTHO05D003393 7.5e-32 141.7 314 39.2
Oeu019432.1 Olea europaea HOM05D003399 ORTHO05D003393 9.8e-32 141.4 244 42.6
Potri.003G164800 Populus trichocarpa HOM05D003399 ORTHO05D003393 1.1e-30 137.9 306 39.5
GSVIVG01000970001 Vitis vinifera HOM05D003399 ORTHO05D003393 1.4e-30 137.5 285 41.1
CiPaw.06G108000 Carya illinoinensis HOM05D003399 ORTHO05D003393 3.2e-30 136.3 230 44.8
TAR374G0208 Trochodendron aralioides HOM05D003399 ORTHO05D003393 9.2e-30 134.8 272 40.8
MSTRG.465 Avicennia marina HOM05D003399 ORTHO05D003393 1.2e-29 134.4 252 43.3
Ciclev10033818m.g Citrus clementina HOM05D003399 ORTHO05D003393 7.8e-29 131.7 296 35.8
Duzib132G1194 Durio zibethinus HOM05D003399 ORTHO05D003393 7.8e-29 131.7 269 39.0
TAR629G1336 Trochodendron aralioides HOM05D003399 ORTHO05D003393 1.0e-28 131.3 269 37.2
Eucgr.G01956 Eucalyptus grandis HOM05D003399 ORTHO05D003393 3.0e-28 129.8 256 42.2
RcHm_v2.0_Chr4g0429231 Rosa chinensis HOM05D003399 ORTHO05D003393 5.0e-28 129.0 315 34.0
Nitab4.5_0014700g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 5.6e-27 125.6 285 39.6
Gohir.A12G140200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.1e-26 123.6 248 37.9
Gohir.D04G140300 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.1e-26 123.6 280 36.8
Gohir.A04G101200 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.8e-26 123.2 279 35.8
Gohir.D12G144800 Gossypium hirsutum HOM05D003399 ORTHO05D003393 2.8e-26 123.2 262 37.0
Prupe.1G218100 Prunus persica HOM05D003399 ORTHO05D003393 1.8e-25 120.6 247 38.9
Gohir.A03G151600 Gossypium hirsutum HOM05D003399 ORTHO05D003393 6.8e-25 118.6 253 35.2
COL.COLO4_07618 Corchorus olitorius HOM05D003399 ORTHO05D003393 1.2e-24 117.9 265 38.5
Gohir.D02G174700 Gossypium hirsutum HOM05D003399 ORTHO05D003393 1.2e-24 117.9 252 35.7
Gorai.012G125300 Gossypium raimondii HOM05D003399 ORTHO05D003393 1.2e-24 117.9 281 35.6
Peaxi162Scf00234g01011 Petunia axillaris HOM05D003399 ORTHO05D003393 1.5e-24 117.5 277 37.2
Gorai.005G196300 Gossypium raimondii HOM05D003399 ORTHO05D003393 2.6e-24 116.7 252 35.3
Aqoxy3G01823 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 5.8e-24 115.5 252 36.5
MD13G1127900 Malus domestica HOM05D003399 ORTHO05D003393 7.5e-24 115.2 243 39.1
Oeu044505.1 Olea europaea HOM05D003399 ORTHO05D003393 9.9e-24 114.8 261 35.6
Dinv12132 Davidia involucrata HOM05D003399 ORTHO05D003393 1.3e-23 114.4 311 36.7
Oeu055475.1 Olea europaea HOM05D003399 ORTHO05D003393 1.7e-23 114.0 262 36.3
Oeu003275.1 Olea europaea HOM05D003399 ORTHO05D003393 2.2e-23 113.6 262 37.4
Gorai.008G156200 Gossypium raimondii HOM05D003399 ORTHO05D003393 2.4e-22 110.2 262 35.9
Peaxi162Scf00128g01764 Petunia axillaris HOM05D003399 ORTHO05D003393 4.1e-22 109.4 224 42.0
FAN17G2315 Fragaria x ananassa HOM05D003399 ORTHO05D003393 2.1e-21 107.1 314 31.2
Nitab4.5_0009065g0010 Nicotiana tabacum HOM05D003399 ORTHO05D003393 6.0e-21 105.5 290 35.9
CAN.G1811.1 Capsicum annuum HOM05D003399 ORTHO05D003393 7.8e-21 105.1 243 38.3
MD16G1128300 Malus domestica HOM05D003399 ORTHO05D003393 7.8e-21 105.1 247 36.4
PGR119G0713 Punica granatum HOM05D003399 ORTHO05D003393 7.8e-21 105.1 220 36.4
TWI75G1177 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 3.0e-20 103.2 187 40.6
Nn3g16314 Nelumbo nucifera HOM05D003399 ORTHO05D003393 1.5e-19 100.9 222 37.4
Eucgr.B03547 Eucalyptus grandis HOM05D003399 ORTHO05D003393 3.3e-19 99.8 230 38.3
Sopen01g005220 Solanum pennellii HOM05D003399 ORTHO05D003393 4.3e-19 99.4 241 37.8
Solyc01g009720.2 Solanum lycopersicum HOM05D003399 ORTHO05D003393 9.5e-19 98.2 240 37.5
Sed0004087 Sechium edule HOM05D003399 ORTHO05D003393 1.2e-18 97.8 255 34.9
Lj6P836T14 Lonicera japonica HOM05D003399 ORTHO05D003393 2.4e-17 93.6 244 36.1
PGSC0003DMG400030004 Solanum tuberosum HOM05D003399 ORTHO05D003393 4.0e-17 92.8 238 35.3
FvH4_4g22950 Fragaria vesca HOM05D003399 ORTHO05D003393 8.9e-17 91.7 316 29.7
FAN12G0769 Fragaria x ananassa HOM05D003399 ORTHO05D003393 1.2e-16 91.3 318 29.6
Atru.chr11.2413 Acer truncatum HOM05D003399 ORTHO05D003393 2.6e-16 90.1 205 35.6
Cpa.g.sc207.7 Carica papaya HOM05D003399 ORTHO05D003393 3.4e-16 89.7 260 33.1
FAN07G1125 Fragaria x ananassa HOM05D003399 ORTHO05D003393 3.4e-16 89.7 318 29.9
PSO017G1762 Papaver somniferum HOM05D003399 ORTHO05D003393 7.6e-16 88.6 221 33.0
Lsat_1_v5_gn_4_1321 Lactuca sativa HOM05D003399 ORTHO05D003393 1.7e-15 87.4 285 33.3
MELO3C017803.2 Cucumis melo HOM05D003399 ORTHO05D003393 2.2e-15 87.0 228 33.3
ClCG07G011810 Citrullus lanatus HOM05D003399 ORTHO05D003393 2.9e-15 86.7 241 32.8
MBI07_g40352_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 1.4e-14 84.3 280 31.4
PSO017G5218 Papaver somniferum HOM05D003399 ORTHO05D003393 3.2e-14 83.2 243 33.3
PSO478G0797 Papaver somniferum HOM05D003399 ORTHO05D003393 4.1e-14 82.8 243 33.3
TWI18G1150 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 4.1e-14 82.8 191 37.2
TWI36G0503 Tripterygium wilfordii HOM05D003399 ORTHO05D003393 7.1e-14 82.0 289 31.1
VMungo1383G2170 Vigna mungo HOM05D003399 ORTHO05D003393 1.2e-13 81.3 216 33.8
AL6G23870 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 1.6e-13 80.9 193 34.2
A03p05900 Brassica napus HOM05D003399 ORTHO05D003393 2.7e-13 80.1 189 32.3
BraA03t09928Z Brassica rapa HOM05D003399 ORTHO05D003393 2.7e-13 80.1 189 32.3
AT5G13250 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 1.0e-12 78.2 194 32.5
PSO478G0221 Papaver somniferum HOM05D003399 ORTHO05D003393 1.0e-12 78.2 231 34.2
Actinidia09608 Actinidia chinensis HOM05D003399 ORTHO05D003393 8.7e-12 75.1 121 48.8
ATR0582G082 Amborella trichopoda HOM05D003399 ORTHO05D003393 8.7e-12 75.1 214 32.7
BcaB01g05366 Brassica carinata HOM05D003399 ORTHO05D003393 8.7e-12 75.1 195 32.3
C03p06820 Brassica napus HOM05D003399 ORTHO05D003393 8.7e-12 75.1 195 32.3
BolC3t13193H Brassica oleracea HOM05D003399 ORTHO05D003393 8.7e-12 75.1 195 32.3
MELO3C022349.2 Cucumis melo HOM05D003399 ORTHO05D003393 1.1e-11 74.7 209 29.7
Sp6g30740 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.1e-11 74.7 194 30.4
Thhalv10015692m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 3.3e-11 73.2 190 31.1
Lalb_Chr04g0258081 Lupinus albus HOM05D003399 ORTHO05D003393 5.6e-11 72.4 280 27.9
ClCG06G001790 Citrullus lanatus HOM05D003399 ORTHO05D003393 7.3e-11 72.0 210 31.0
Cc11_g17500 Coffea canephora HOM05D003399 ORTHO05D003393 7.3e-11 72.0 112 40.2
CARHR200200 Cardamine hirsuta HOM05D003399 ORTHO05D003393 1.2e-10 71.2 199 31.7
A02p01800 Brassica napus HOM05D003399 ORTHO05D003393 1.6e-10 70.9 204 31.4
BraA02t05155Z Brassica rapa HOM05D003399 ORTHO05D003393 1.6e-10 70.9 204 31.4
ECA233G3644 Erigeron canadensis HOM05D003399 ORTHO05D003393 3.6e-10 69.7 241 31.5
CANSAT01G0203 Cannabis sativa HOM05D003399 ORTHO05D003393 6.2e-10 68.9 231 29.0
THA.LOC104807363 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.1e-09 68.2 227 29.1
CsaV3_6G007830 Cucumis sativus L. HOM05D003399 ORTHO05D003393 1.4e-09 67.8 211 28.0
HanXRQChr12g0362291 Helianthus annuus HOM05D003399 ORTHO05D003393 1.4e-09 67.8 271 31.0
A08p25920 Brassica napus HOM05D003399 ORTHO05D003393 1.8e-09 67.4 276 29.0
Carub.0006s1142 Capsella rubella HOM05D003399 ORTHO05D003393 2.4e-09 67.0 190 31.6
CsaV3_4G002390 Cucumis sativus L. HOM05D003399 ORTHO05D003393 2.4e-09 67.0 215 32.6
BcaC04g19132 Brassica carinata HOM05D003399 ORTHO05D003393 4.0e-09 66.2 195 29.7
BolC9t59223H Brassica oleracea HOM05D003399 ORTHO05D003393 4.0e-09 66.2 195 29.7
C09p63830 Brassica napus HOM05D003399 ORTHO05D003393 5.2e-09 65.9 195 29.7
BraA08t34543Z Brassica rapa HOM05D003399 ORTHO05D003393 9.0e-09 65.1 280 28.6
Nn4g22186 Nelumbo nucifera HOM05D003399 ORTHO05D003393 9.0e-09 65.1 169 33.1
Migut.K01039 Erythranthe guttata HOM05D003399 ORTHO05D003393 1.2e-08 64.7 193 31.1
THA.LOC104825469 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 1.5e-08 64.3 229 29.7
BcaNung01873 Brassica carinata HOM05D003399 ORTHO05D003393 2.0e-08 63.9 204 30.9
C07p17320 Brassica napus HOM05D003399 ORTHO05D003393 2.0e-08 63.9 200 29.0
BolC7t42236H Brassica oleracea HOM05D003399 ORTHO05D003393 2.0e-08 63.9 200 29.0
A10p24960 Brassica napus HOM05D003399 ORTHO05D003393 2.6e-08 63.5 192 29.7
BraA10t44558Z Brassica rapa HOM05D003399 ORTHO05D003393 2.6e-08 63.5 192 29.7
Sed0023362 Sechium edule HOM05D003399 ORTHO05D003393 2.6e-08 63.5 188 31.4
BcaC01g00006 Brassica carinata HOM05D003399 ORTHO05D003393 3.4e-08 63.2 204 30.9
Lj1g0015103 Lotus japonicus HOM05D003399 ORTHO05D003393 3.4e-08 63.2 201 31.3
Medtr7g021270 Medicago truncatula HOM05D003399 ORTHO05D003393 3.4e-08 63.2 211 30.3
C03p74730 Brassica napus HOM05D003399 ORTHO05D003393 4.4e-08 62.8 203 30.5
Nn2g15077 Nelumbo nucifera HOM05D003399 ORTHO05D003393 4.4e-08 62.8 166 33.1
C02p06020 Brassica napus HOM05D003399 ORTHO05D003393 5.8e-08 62.4 203 31.0
Psat3g189760 Pisum sativum HOM05D003399 ORTHO05D003393 7.6e-08 62.0 197 31.0
AL1G41590 Arabidopsis lyrata HOM05D003399 ORTHO05D003393 1.3e-07 61.2 218 29.4
BolC3t19722H Brassica oleracea HOM05D003399 ORTHO05D003393 1.3e-07 61.2 273 26.7
Thhalv10009825m.g Eutrema salsugineum HOM05D003399 ORTHO05D003393 1.3e-07 61.2 224 27.7
Carub.0001s2651 Capsella rubella HOM05D003399 ORTHO05D003393 1.7e-07 60.8 219 28.3
Sp1g24260 Schrenkiella parvula HOM05D003399 ORTHO05D003393 1.7e-07 60.8 215 31.2
MBI11_g08161_MAGBIO Magnolia biondii HOM05D003399 ORTHO05D003393 2.2e-07 60.5 258 27.9
AT1G28080 Arabidopsis thaliana HOM05D003399 ORTHO05D003393 2.9e-07 60.1 210 31.9
BcaB03g12138 Brassica carinata HOM05D003399 ORTHO05D003393 2.9e-07 60.1 277 26.4
BolC2t06544H Brassica oleracea HOM05D003399 ORTHO05D003393 2.9e-07 60.1 213 29.6
THA.LOC104820532 Tarenaya hassleriana HOM05D003399 ORTHO05D003393 4.9e-07 59.3 206 30.1
Glyma.08G258100 Glycine max HOM05D003399 ORTHO05D003393 6.4e-07 58.9 225 27.6
SalBow7G1980 Salvia bowleyana HOM05D003399 ORTHO05D003393 6.4e-07 58.9 83 42.2
BcaC05g26625 Brassica carinata HOM05D003399 ORTHO05D003393 8.4e-07 58.5 229 26.2
C05p26750 Brassica napus HOM05D003399 ORTHO05D003393 8.4e-07 58.5 229 26.2
Lalb_Chr10g0092161 Lupinus albus HOM05D003399 ORTHO05D003393 8.4e-07 58.5 239 28.5
BolC5t31399H Brassica oleracea HOM05D003399 ORTHO05D003393 1.9e-06 57.4 229 26.2
BcaB03g13959 Brassica carinata HOM05D003399 ORTHO05D003393 2.4e-06 57.0 199 29.1
HanXRQChr08g0210071 Helianthus annuus HOM05D003399 ORTHO05D003393 2.4e-06 57.0 273 27.5
A09p38010 Brassica napus HOM05D003399 ORTHO05D003393 3.2e-06 56.6 221 27.1
BraA09t39311Z Brassica rapa HOM05D003399 ORTHO05D003393 3.2e-06 56.6 221 27.1
CARHR027530 Cardamine hirsuta HOM05D003399 ORTHO05D003393 3.2e-06 56.6 205 29.8
Nn3g16435 Nelumbo nucifera HOM05D003399 ORTHO05D003393 3.2e-06 56.6 169 30.8
DCAR_024622 Daucus carota HOM05D003399 ORTHO05D003393 4.2e-06 56.2 266 28.9
Glyma.18G282500 Glycine max HOM05D003399 ORTHO05D003393 4.2e-06 56.2 221 29.9
BcaC06g35330 Brassica carinata HOM05D003399 ORTHO05D003393 7.1e-06 55.5 33 72.7
Aa31LG3G14410 Aethionema arabicum HOM05D003399 ORTHO05D003393 9.3e-06 55.1 29 79.3
Aqoxy5G03202 Aquilegia oxysepala HOM05D003399 ORTHO05D003393 9.3e-06 55.1 180 29.4


User provided reference genes

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