Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.9e-249 864.8 442 100.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 5.4e-227 790.8 439 92.0
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 8.1e-215 750.4 440 88.6
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.4e-214 749.6 440 88.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.0e-214 748.0 440 88.4
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.7e-212 742.7 439 87.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.2e-212 742.3 441 88.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.8e-207 725.3 443 86.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.4e-206 723.0 440 84.8
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.8e-206 722.6 441 85.3
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.4e-206 722.2 441 85.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 6.9e-206 720.7 448 84.8
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 9.0e-206 720.3 441 85.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.6e-205 718.8 441 85.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.9e-205 716.8 450 84.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 2.2e-204 715.7 441 83.4
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 2.9e-204 715.3 441 84.4
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 6.4e-204 714.1 439 84.3
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.4e-204 714.1 443 83.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.1e-203 713.4 444 83.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.1e-203 713.4 441 83.7
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.2e-203 711.8 442 82.8
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.2e-203 711.8 443 82.6
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 5.4e-203 711.1 441 84.4
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 9.3e-203 710.3 442 82.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.1e-202 709.1 440 83.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.7e-202 708.8 444 82.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.7e-202 708.8 441 83.2
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 84.1
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 7.8e-202 707.2 446 83.9
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.8e-202 707.2 442 83.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.7e-201 706.1 440 83.9
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.7e-201 706.1 441 83.7
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.0e-201 705.3 441 82.8
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 3.0e-201 705.3 440 83.9
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.1e-201 704.5 441 83.7
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 8.7e-201 703.7 441 82.8
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-200 703.4 442 83.3
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.5e-200 703.0 419 86.4
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.5e-200 702.2 441 84.1
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.5e-200 702.2 442 81.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.3e-199 699.9 442 82.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-199 699.5 440 82.5
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 82.4
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.1e-198 696.8 449 80.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.4e-198 696.4 440 82.7
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.8e-198 696.0 443 83.1
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.8e-198 696.0 440 81.8
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 4.0e-198 694.9 445 82.5
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 81.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.2e-197 693.3 440 82.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.0e-197 692.6 442 81.4
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.6e-197 692.2 404 87.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 4.5e-197 691.4 444 81.8
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.8e-197 691.0 444 81.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 7.6e-197 690.6 441 81.6
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.7e-196 689.5 396 90.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.9e-196 688.7 445 81.3
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 4.9e-196 688.0 444 80.9
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.4e-196 687.6 447 81.4
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 6.4e-196 687.6 442 81.4
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.4e-195 686.4 442 80.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.4e-195 685.6 443 81.3
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.4e-195 684.5 442 81.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-194 683.3 443 81.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.2e-194 683.3 442 80.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.1e-194 682.6 444 80.9
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.6e-194 681.4 442 80.1
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 7.9e-194 680.6 440 81.4
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.0e-193 680.2 440 80.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 1.0e-193 680.2 446 79.8
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.3e-193 679.1 446 80.0
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-193 678.7 443 80.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.0e-193 678.7 443 80.4
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.9e-192 676.0 444 79.7
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.3e-192 674.9 440 80.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 4.3e-192 674.9 415 83.6
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 5.6e-192 674.5 400 85.5
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 7.4e-192 674.1 442 79.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.3e-191 673.3 400 85.2
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.3e-191 673.3 438 79.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.8e-191 671.4 442 79.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 6.2e-191 671.0 444 80.0
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.2e-191 671.0 445 79.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 8.1e-191 670.6 445 79.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.1e-190 670.2 443 79.5
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.1e-190 670.2 442 80.5
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.4e-190 669.8 398 84.9
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.4e-190 669.8 442 79.4
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.4e-190 669.8 447 80.3
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.4e-190 669.1 438 79.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 4.0e-190 668.3 443 79.7
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.3e-190 667.9 442 79.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 9.9e-189 663.7 446 78.7
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 8.4e-188 660.6 440 79.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-187 660.2 406 83.7
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-187 660.2 406 83.7
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.4e-187 659.8 441 77.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 5.5e-187 657.9 445 79.1
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 7.1e-187 657.5 397 84.4
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 9.3e-187 657.1 442 78.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 6.0e-186 654.4 442 77.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.0e-185 653.7 387 87.3
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.3e-184 648.7 383 85.4
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 4.3e-184 648.3 443 76.5
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 4.3e-184 648.3 443 76.5
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 8.2e-183 644.0 372 87.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.0e-181 639.4 427 78.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.6e-181 639.0 440 78.6
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 3.8e-180 635.2 375 85.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 4.9e-180 634.8 378 84.4
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.2e-179 631.7 381 87.1
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 7.1e-179 630.9 396 80.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.3e-177 626.7 482 71.2
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.3e-177 625.9 378 83.6
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 5.1e-177 624.8 483 69.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.6e-175 619.8 396 78.8
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.4e-171 606.7 442 75.1
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 9.4e-171 604.0 443 72.9
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-162 577.0 380 81.1
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 5.1e-161 571.6 394 77.9
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.5e-155 551.6 305 92.5
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-154 550.4 374 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.1e-152 543.9 398 70.1
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.3e-150 535.0 371 70.1
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 7.7e-149 531.2 362 77.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 8.5e-148 527.7 363 70.5
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.5e-147 526.2 385 69.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 9.4e-147 524.2 378 69.6
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.6e-146 522.3 381 69.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.7e-146 521.9 381 69.6
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 6.8e-145 518.1 389 67.6
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 4.4e-144 515.4 362 69.9
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-144 514.6 366 68.3
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 9.7e-144 514.2 361 73.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.2e-141 507.3 362 68.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.1e-138 496.5 364 68.1
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.6e-138 495.7 396 61.6
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.5e-133 479.2 374 63.4
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 8.0e-130 468.0 359 63.8
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 8.0e-130 468.0 317 77.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 4.7e-114 415.6 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 5.4e-102 375.6 366 56.8
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.6e-93 345.9 302 61.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 5.6e-83 312.4 226 71.7
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.2e-70 269.6 186 78.5
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.1e-69 267.3 328 44.8
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-62 243.8 197 62.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 7.9e-61 238.8 139 88.5
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.6e-58 231.1 123 88.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 7.7e-56 222.2 160 70.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-41 175.3 162 56.2
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 3.5e-40 170.2 119 71.4
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.0e-36 156.8 111 77.5
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.1e-33 147.1 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 5.0e-31 139.8 80 87.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 4.0e-28 130.2 137 52.6
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.8e-26 123.2 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.6e-19 100.9 109 48.6
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.3e-15 88.6 94 52.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 4.9e-10 70.1 143 37.1


User provided reference genes

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