Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 6.8e-137 490.7 259 100.0
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 1.7e-119 433.0 259 89.2
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.5e-104 383.3 260 78.5
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.9e-99 366.3 250 76.4
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 9.5e-99 364.0 250 76.0
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.8e-97 359.8 243 75.3
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.2e-96 357.1 246 74.4
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 4.4e-96 355.1 255 72.2
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 7.6e-96 354.4 246 73.2
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.7e-95 353.2 258 73.3
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.4e-94 350.1 232 77.2
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 1.4e-94 350.1 248 73.4
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 7.8e-93 344.4 232 75.0
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 3.0e-92 342.4 243 74.5
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.0e-92 342.4 258 72.1
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 3.0e-92 342.4 247 70.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 3.9e-92 342.0 252 72.2
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 6.6e-92 341.3 258 71.7
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 2.5e-91 339.3 257 68.5
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.5e-91 339.3 250 71.2
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 3.3e-91 339.0 251 72.1
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 4.3e-91 338.6 259 71.8
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 4.3e-91 338.6 248 71.4
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 7.3e-91 337.8 260 68.1
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 1.6e-90 336.7 259 69.1
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 2.1e-90 336.3 245 71.4
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 2.1e-90 336.3 239 73.6
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 2.8e-90 335.9 239 73.6
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 3.6e-90 335.5 240 71.7
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 6.2e-90 334.7 240 71.7
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 6.2e-90 334.7 226 76.1
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 6.2e-90 334.7 252 71.0
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 8.1e-90 334.3 256 69.9
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 1.1e-89 334.0 235 71.5
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.1e-89 332.4 227 74.4
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 3.1e-89 332.4 231 69.7
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 3.1e-89 332.4 256 69.1
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 4.0e-89 332.0 251 69.3
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 9.0e-89 330.9 259 68.0
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 1.2e-88 330.5 252 70.6
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 1.2e-88 330.5 248 68.5
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 1.2e-88 330.5 204 79.9
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 1.2e-88 330.5 226 75.7
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.5e-88 330.1 259 68.0
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.6e-88 329.3 232 72.4
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.6e-88 329.3 232 72.4
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 3.4e-88 328.9 252 68.3
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 5.8e-88 328.2 231 71.4
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.8e-88 328.2 259 67.6
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 7.6e-88 327.8 247 68.8
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 7.6e-88 327.8 214 76.6
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.2e-87 326.2 241 70.5
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 3.8e-87 325.5 241 70.1
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 6.4e-87 324.7 230 73.9
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 6.4e-87 324.7 275 63.6
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 8.4e-87 324.3 224 71.4
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 1.4e-86 323.6 251 68.9
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.9e-86 323.2 247 66.4
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.9e-86 323.2 235 69.8
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 4.2e-86 322.0 254 64.6
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 5.4e-86 321.6 246 67.1
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.2e-85 320.5 245 65.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 2.7e-85 319.3 256 66.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 2.7e-85 319.3 241 66.8
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.5e-85 318.9 245 66.1
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 4.6e-85 318.5 238 66.8
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 1.3e-84 317.0 239 65.7
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 2.3e-84 316.2 243 67.9
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 5.1e-84 315.1 246 65.4
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 6.6e-84 314.7 246 65.0
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 8.7e-84 314.3 246 63.8
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.5e-83 313.5 232 65.5
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.5e-83 313.5 239 65.3
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 1.9e-83 313.2 211 71.1
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.9e-83 313.2 229 72.5
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.3e-83 312.0 245 66.1
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 5.6e-83 311.6 244 65.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 7.3e-83 311.2 244 65.6
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 9.6e-83 310.8 239 65.7
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.6e-82 310.1 239 66.1
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 2.8e-82 309.3 220 68.2
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 3.6e-82 308.9 242 65.7
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 3.6e-82 308.9 221 68.3
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 6.2e-82 308.1 223 70.9
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 3.1e-81 305.8 212 69.8
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 3.1e-81 305.8 212 69.8
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 9.9e-80 300.8 397 46.1
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 4.9e-79 298.5 231 67.1
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 8.4e-79 297.7 194 78.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.4e-78 297.0 229 65.9
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 2.4e-78 296.2 233 66.5
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.6e-77 293.5 244 63.1
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 6.7e-76 288.1 224 66.1
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 8.7e-76 287.7 224 66.1
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.6e-74 283.5 242 62.0
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.0e-68 264.2 246 60.2
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 3.4e-64 249.2 194 64.4
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 1.3e-58 230.7 199 59.3
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 2.8e-58 229.6 222 56.8
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.8e-57 226.9 225 54.7
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 4.1e-57 225.7 191 63.9
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 3.8e-55 219.2 241 50.2
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 6.7e-52 208.4 156 73.1
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 4.2e-46 189.1 133 67.7
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 7.9e-45 184.9 243 44.9
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.0e-39 167.9 110 74.5
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.9e-38 163.7 98 79.6
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.0e-31 141.4 128 57.8
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 6.1e-29 132.1 87 77.0
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 8.8e-20 101.7 231 34.6
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 1.1e-06 58.2 159 25.2
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 1.9e-06 57.4 203 26.6


User provided reference genes

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