Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.0e-75 285.0 140 100.0
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 8.1e-60 233.8 224 59.8
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.2e-25 119.4 67 88.1
Rhsim12G0010900 Rhododendron simsii HOM05D000176 ORTHO05D000106 3.8e-25 118.6 74 79.7
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.3e-20 103.6 67 79.1
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 4.9e-17 91.7 67 65.7
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 8.4e-17 90.9 67 67.2
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.1e-13 80.5 67 59.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.1e-13 80.5 67 59.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 3.3e-13 79.0 67 58.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 9.6e-13 77.4 81 51.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.3e-12 77.0 67 56.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 6.3e-12 74.7 99 45.5
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 8.2e-12 74.3 67 56.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 8.2e-12 74.3 67 55.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.4e-11 73.6 67 55.2
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.8e-11 73.2 67 56.7
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 2.4e-11 72.8 67 53.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 3.1e-11 72.4 67 53.7
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 3.1e-11 72.4 67 55.2
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 4.1e-11 72.0 67 55.2
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 4.1e-11 72.0 67 52.2
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 5.3e-11 71.6 67 53.7
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 6.9e-11 71.2 67 50.7
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 9.0e-11 70.9 67 52.2
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 9.0e-11 70.9 67 52.2
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 9.0e-11 70.9 67 52.2
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.4e-10 68.9 81 44.4
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 4.5e-10 68.6 67 50.7
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 4.5e-10 68.6 67 52.2
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 5.9e-10 68.2 67 55.2
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.0e-09 67.4 67 52.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.0e-09 67.4 81 48.1
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 1.3e-09 67.0 67 49.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.3e-09 67.0 67 49.3
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.3e-09 67.0 67 49.3
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.7e-09 66.6 81 42.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.7e-09 66.6 67 47.8
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.7e-09 66.6 105 41.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 1.7e-09 66.6 67 50.7
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.2e-09 66.2 67 50.7
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 2.9e-09 65.9 81 43.2
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 2.9e-09 65.9 81 43.2
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.8e-09 65.5 67 47.8
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.8e-09 65.5 67 49.3
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.0e-09 65.1 67 47.8
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 5.0e-09 65.1 67 50.7
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 5.0e-09 65.1 67 49.3
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.5e-09 64.7 67 47.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 6.5e-09 64.7 100 41.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 8.5e-09 64.3 151 33.1
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.4e-08 63.5 81 44.4
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 1.9e-08 63.2 67 49.3
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 1.9e-08 63.2 67 50.7
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.5e-08 62.8 151 31.1
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.5e-08 62.8 81 44.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 5.5e-08 61.6 81 40.7
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.6e-07 60.1 81 40.7
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 2.1e-07 59.7 81 43.2
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 2.1e-07 59.7 81 43.2
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.7e-07 59.3 81 40.7
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 3.6e-07 58.9 81 38.3
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 4.6e-07 58.5 81 40.7
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 4.6e-07 58.5 67 43.3
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.6e-07 58.5 67 44.8
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 4.6e-07 58.5 81 38.3
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 6.1e-07 58.2 63 49.2
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 6.1e-07 58.2 63 49.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 6.1e-07 58.2 81 40.7
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 7.9e-07 57.8 153 30.1
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.0e-06 57.4 34 85.3
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 1.3e-06 57.0 67 43.3
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 1.8e-06 56.6 82 42.7
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 2.3e-06 56.2 81 39.5
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 3.0e-06 55.8 63 47.6
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.9e-06 55.5 67 40.3
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.1e-06 55.1 81 43.2


User provided reference genes

Program Settings