Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.5e-181 639.4 330 100.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.6e-130 469.9 333 76.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.7e-98 362.8 334 62.6
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 4.6e-98 362.1 337 62.0
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.2e-93 347.4 337 61.4
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-88 330.9 371 54.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.6e-85 319.7 373 54.7
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.7e-85 318.2 333 59.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-83 313.9 333 58.9
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.8e-76 289.3 364 50.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.9e-75 287.0 363 49.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 9.4e-75 284.6 373 48.8
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.2e-74 284.3 373 49.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 2.1e-74 283.5 340 52.4
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.7e-74 283.1 386 47.2
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 4.7e-74 282.3 370 48.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.4e-73 280.8 371 46.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.8e-73 280.4 346 51.2
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.3e-73 280.0 380 48.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.3e-73 280.0 342 51.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.9e-73 279.3 381 48.3
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 5.1e-73 278.9 346 50.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.1e-73 278.9 346 51.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.5e-72 277.3 384 46.4
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.6e-72 276.6 349 50.7
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.2e-71 273.5 362 49.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 4.8e-71 272.3 389 45.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 6.3e-71 271.9 364 48.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.3e-70 268.9 368 46.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.0e-70 268.5 380 48.7
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 9.1e-70 268.1 354 47.5
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.2e-69 267.7 370 46.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-69 267.3 350 48.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-69 266.2 367 49.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.7e-69 265.0 370 46.5
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.2e-68 263.5 383 47.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.9e-68 263.1 370 45.9
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 8.5e-68 261.5 367 46.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.5e-67 260.8 379 46.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.2e-67 259.6 382 46.3
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.1e-66 256.9 339 49.6
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 6.7e-65 251.9 355 48.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.6e-64 250.0 332 47.3
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.3e-64 249.6 365 43.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 4.4e-64 249.2 344 49.7
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.4e-64 249.2 368 44.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 5.7e-64 248.8 344 49.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 5.7e-64 248.8 426 41.3
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.2e-63 246.9 373 43.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.8e-63 245.7 365 43.3
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.4e-62 244.2 357 48.2
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.4e-62 243.4 367 43.3
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.2e-61 241.1 367 43.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.0e-61 240.4 328 45.7
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.9e-61 238.8 292 52.4
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.9e-61 238.8 292 52.4
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.7e-60 237.3 336 48.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 6.5e-60 235.3 423 41.6
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.5e-60 235.3 337 50.1
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-59 234.2 336 45.5
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.7e-58 229.9 337 45.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.3e-57 226.9 364 42.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.8e-57 225.3 389 41.1
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.2e-56 224.6 353 44.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.2e-56 224.6 362 43.4
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.7e-56 222.2 330 45.2
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-54 217.2 386 40.7
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.1e-54 216.1 393 41.2
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 7.0e-54 215.3 334 44.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-53 213.8 359 40.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.5e-53 213.0 378 41.5
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 5.9e-53 212.2 335 45.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.0e-52 211.5 339 43.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.2e-52 210.3 365 40.5
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.9e-52 209.9 349 41.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 7.2e-51 205.3 405 39.3
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.6e-50 204.1 333 43.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.6e-50 204.1 352 40.6
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.0e-50 201.8 359 40.7
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.8e-49 198.7 348 41.7
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 6.8e-49 198.7 335 43.9
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-47 194.5 334 40.4
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.9e-47 192.6 329 39.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.3e-47 192.2 336 41.4
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.1e-46 189.9 382 37.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.1e-46 189.9 336 39.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.4e-46 189.1 343 39.9
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.0e-45 187.2 353 40.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.5e-45 186.0 337 40.7
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.9e-45 185.7 315 42.9
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.3e-44 184.5 315 42.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.7e-44 184.1 133 75.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.5e-43 181.0 333 41.7
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 9.5e-43 178.3 333 40.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-42 177.9 334 40.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.1e-42 177.2 334 39.5
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.7e-42 176.0 338 39.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.1e-42 175.6 334 39.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-40 171.4 331 37.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.0e-40 170.6 324 43.5
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.4e-40 169.5 328 38.1
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.7e-40 169.1 283 42.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.3e-39 165.6 329 37.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.2e-38 163.3 209 50.2
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.4e-38 162.5 326 38.7
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.0e-38 162.2 383 33.7
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-37 161.0 335 38.8
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.6e-37 161.0 335 38.8
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.6e-37 161.0 335 38.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.6e-37 161.0 382 35.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.0e-37 160.6 456 33.1
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.0e-36 158.3 326 39.3
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.7e-36 157.5 328 37.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.3e-36 157.1 126 68.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.9e-36 156.4 344 36.0
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.5e-35 153.7 333 38.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-34 151.4 335 34.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.6e-34 149.8 331 36.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 6.2e-34 149.1 338 38.5
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 6.2e-34 149.1 338 38.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 8.0e-34 148.7 338 37.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 8.0e-34 148.7 329 36.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.3e-33 147.1 238 43.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 3.1e-33 146.7 144 55.6
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.5e-32 144.4 382 34.3
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.6e-32 143.7 377 33.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 4.4e-32 142.9 332 36.1
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.5e-32 142.1 333 35.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-31 140.6 154 54.5
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.2e-31 140.6 154 54.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-31 139.8 154 53.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 6.4e-31 139.0 148 55.4
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.4e-31 139.0 357 34.7
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 8.3e-31 138.7 364 37.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 4.1e-30 136.3 190 47.4
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.2e-29 134.8 107 67.3
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-29 133.3 152 50.7
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.5e-29 133.3 152 50.7
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-27 128.3 168 48.8
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 168 48.8
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-27 128.3 168 48.8
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.6e-27 125.9 73 90.4
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 7.3e-27 125.6 104 64.4
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 7.3e-27 125.6 104 64.4
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 7.3e-27 125.6 112 60.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.8e-26 123.6 138 50.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.7e-26 122.9 383 30.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.7e-26 122.9 348 32.8
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.1e-26 122.1 116 53.4
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.8e-25 120.9 108 59.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.1e-25 120.2 151 47.0
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.4e-24 116.7 113 59.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 3.4e-24 116.7 214 38.3
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.9e-23 113.6 73 79.5
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 8.3e-23 112.1 113 55.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.9e-22 110.9 348 31.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.2e-22 110.2 115 53.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 7.1e-22 109.0 149 38.3
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 9.2e-22 108.6 143 46.9
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.7e-21 107.1 109 54.1
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 4.6e-21 106.3 106 47.2
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 4.3e-19 99.8 343 30.9
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 7.3e-19 99.0 276 32.2
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 7.6e-16 89.0 335 29.3
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 7.6e-16 89.0 233 31.8
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.0e-12 78.6 84 45.2
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.7e-12 77.8 277 28.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.5e-11 74.7 43 83.7
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-07 61.2 109 36.7
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.8e-07 60.1 74 39.2
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 6.4e-07 59.3 124 33.1
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.1e-06 58.5 109 33.9
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-06 58.2 110 32.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.9e-06 57.8 154 31.8
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.2e-06 57.0 133 34.6


User provided reference genes

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