Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.1e-175 618.6 378 100.0
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 5.9e-158 561.2 378 83.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.3e-141 506.9 378 73.3
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.4e-119 433.7 382 62.6
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 5.3e-114 415.2 381 64.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.3e-112 410.6 385 61.3
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.2e-110 404.1 381 60.4
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 1.9e-108 396.7 383 56.1
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.3e-107 394.0 388 57.5
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.7e-107 392.5 381 53.3
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 8.1e-107 391.3 385 58.7
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.8e-105 385.2 384 52.9
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.9e-104 382.9 382 56.8
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 3.8e-104 382.5 382 59.2
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.2e-103 379.4 375 59.2
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 9.3e-103 377.9 381 56.2
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.6e-102 377.1 381 56.2
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 2.1e-102 376.7 379 52.5
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 3.5e-102 375.9 384 49.0
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 6.0e-102 375.2 387 54.8
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 6.0e-102 375.2 384 53.1
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.3e-101 374.0 386 59.6
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.3e-101 373.2 380 63.2
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 3.9e-101 372.5 385 48.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 8.7e-101 371.3 387 53.7
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 1.5e-100 370.5 382 56.0
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.9e-100 370.2 380 53.7
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.7e-100 368.6 380 53.4
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 5.7e-100 368.6 380 55.3
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 5.7e-100 368.6 367 61.9
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.8e-99 366.3 381 53.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.8e-99 365.5 392 55.1
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.3e-99 365.2 400 54.5
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 8.2e-99 364.8 367 62.7
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 2.4e-98 363.2 382 65.7
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 2.4e-98 363.2 383 54.8
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 5.3e-98 362.1 367 61.6
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.6e-97 359.8 379 54.1
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 7.6e-97 358.2 382 54.5
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.3e-96 357.5 358 56.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.3e-96 357.5 376 54.0
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 1.7e-96 357.1 382 51.6
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.2e-96 356.7 382 56.3
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 2.9e-96 356.3 379 54.4
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 6.5e-96 355.1 382 51.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 8.5e-96 354.8 380 54.5
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.4e-95 354.0 385 49.1
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.2e-95 352.8 388 49.5
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.3e-93 346.7 382 55.0
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 3.9e-93 345.9 365 56.2
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 8.7e-93 344.7 375 57.9
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.5e-92 344.0 384 51.3
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 3.3e-92 342.8 388 52.3
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 5.7e-92 342.0 382 53.4
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.7e-92 342.0 374 50.8
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.4e-92 341.7 381 48.0
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.1e-90 337.8 327 54.4
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 1.4e-90 337.4 373 51.7
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 5.3e-90 335.5 380 48.4
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 3.4e-89 332.8 379 54.4
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.7e-88 330.5 387 49.9
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 6.5e-88 328.6 386 52.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 9.4e-87 324.7 376 53.2
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.2e-86 324.3 386 48.7
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.7e-86 323.2 378 48.7
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.1e-84 317.8 378 50.8
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 2.6e-84 316.6 380 50.3
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 9.7e-84 314.7 380 54.2
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 8.2e-83 311.6 380 47.4
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.0e-80 304.7 384 47.9
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.2e-80 303.5 378 46.8
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 3.2e-79 299.7 397 52.1
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.2e-78 297.7 379 45.4
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.0e-77 294.7 381 45.4
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 3.9e-77 292.7 385 50.1
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 3.9e-77 292.7 385 50.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 1.5e-76 290.8 385 49.9
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.6e-76 290.0 368 43.2
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 7.4e-76 288.5 377 47.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 3.7e-75 286.2 377 55.4
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 1.8e-74 283.9 386 50.5
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 5.3e-74 282.3 388 48.7
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.2e-73 281.2 386 50.0
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.2e-73 281.2 386 50.0
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.2e-73 281.2 386 50.0
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 1.2e-73 281.2 378 43.1
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 2.6e-73 280.0 386 50.0
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 2.6e-73 280.0 385 48.3
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 3.8e-72 276.2 378 50.8
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 5.0e-72 275.8 383 44.4
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.5e-71 274.2 373 41.3
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.2e-71 272.7 388 48.7
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.2e-71 272.7 373 41.6
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 7.2e-71 271.9 378 51.3
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.1e-70 270.4 378 46.8
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 6.1e-70 268.9 386 52.1
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 8.0e-70 268.5 385 55.1
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.0e-68 263.8 373 40.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.3e-68 263.1 366 47.0
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.3e-68 263.1 385 42.3
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.7e-67 260.8 385 51.2
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.9e-65 252.3 373 39.9
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.2e-64 250.4 369 44.4
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 2.6e-60 236.9 333 53.2
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.3e-59 232.3 329 47.1
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 6.3e-59 232.3 375 37.6
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 1.8e-58 230.7 360 37.2
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 1.0e-56 224.9 371 36.9
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 9.5e-55 218.4 171 63.2
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 8.8e-53 211.8 391 46.5
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 2.6e-52 210.3 380 34.7
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 7.8e-49 198.7 127 66.9
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 4.3e-47 193.0 130 70.8
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.1e-46 190.7 383 38.6
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 6.1e-46 189.1 385 46.2
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.0e-40 170.2 288 36.1
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 9.5e-39 165.2 159 50.3
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.4e-37 161.4 379 34.6
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.4e-34 150.6 215 43.7
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.7e-27 127.9 396 27.3
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 1.0e-24 118.6 142 42.3
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.6e-24 115.9 114 48.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.3e-23 113.6 360 26.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 5.6e-23 112.8 160 43.8
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 8.1e-22 109.0 101 51.5
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 2.1e-17 94.4 160 38.1
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 9.6e-15 85.5 174 33.3
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.3e-11 75.1 125 34.4
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 9.3e-10 68.9 54 57.4
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 1.1e-07 62.0 88 40.9
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 4.3e-07 60.1 180 27.8


User provided reference genes

Program Settings