Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-91 340.1 175 100.0
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.6e-68 262.3 186 78.0
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.1e-61 238.4 183 71.6
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.6e-60 235.7 184 67.9
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.9e-59 232.3 187 67.4
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 5.0e-59 231.5 187 66.8
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 8.5e-59 230.7 187 65.8
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 5.5e-58 228.0 194 65.5
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.0e-56 223.8 145 77.2
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.0e-56 223.8 187 65.2
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 2.3e-56 222.6 194 61.9
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 4.0e-56 221.9 194 61.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 5.2e-56 221.5 194 63.4
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 6.8e-56 221.1 194 62.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.8e-56 221.1 187 63.6
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 8.8e-56 220.7 194 61.9
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.2e-55 220.3 194 61.3
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-55 220.3 194 61.9
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.2e-55 220.3 194 61.9
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.5e-55 219.9 194 61.3
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 2.0e-55 219.5 194 60.8
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 2.0e-55 219.5 194 60.8
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 2.0e-55 219.5 187 63.6
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.4e-55 218.8 187 64.7
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.4e-55 218.4 187 62.0
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 4.4e-55 218.4 193 61.7
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 7.5e-55 217.6 184 63.0
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 7.5e-55 217.6 199 60.3
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.8e-55 217.2 194 60.3
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 1.7e-54 216.5 194 59.3
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 2.2e-54 216.1 187 62.0
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.7e-54 215.3 196 61.7
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 4.8e-54 214.9 187 62.0
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 6.3e-54 214.5 194 60.8
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 6.3e-54 214.5 187 63.6
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 8.3e-54 214.2 203 57.1
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.3e-54 214.2 206 61.7
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.1e-53 213.8 203 57.6
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.4e-53 213.4 187 61.5
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.4e-53 213.4 194 59.3
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.4e-53 213.4 194 59.8
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.8e-53 213.0 194 58.2
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-53 213.0 196 61.7
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 3.1e-53 212.2 199 58.8
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 5.4e-53 211.5 187 62.0
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 5.4e-53 211.5 194 59.8
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 7.0e-53 211.1 194 59.8
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 7.0e-53 211.1 187 58.8
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 7.0e-53 211.1 194 59.3
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 9.1e-53 210.7 187 61.5
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.2e-52 210.3 187 59.4
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.2e-52 210.3 187 61.0
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.0e-52 209.5 187 61.5
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.7e-52 209.1 187 60.4
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.5e-52 208.8 187 58.8
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.5e-52 208.8 194 58.8
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.5e-52 208.4 184 61.4
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 4.5e-52 208.4 194 57.7
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 4.5e-52 208.4 194 57.7
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 5.9e-52 208.0 187 59.9
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 7.7e-52 207.6 181 60.8
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 7.7e-52 207.6 187 59.9
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 7.7e-52 207.6 194 58.2
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 7.7e-52 207.6 187 58.8
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.0e-51 207.2 194 58.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.0e-51 207.2 194 58.2
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 1.0e-51 207.2 187 58.8
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.3e-51 206.8 187 58.3
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.7e-51 206.5 194 56.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 2.2e-51 206.1 187 58.3
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.9e-51 205.7 187 60.4
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 2.9e-51 205.7 187 58.8
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.9e-51 205.7 187 58.8
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 3.8e-51 205.3 187 58.8
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 3.8e-51 205.3 187 60.4
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 3.8e-51 205.3 186 60.2
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 3.8e-51 205.3 183 59.0
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 3.8e-51 205.3 187 57.8
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 5.0e-51 204.9 187 60.4
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.0e-51 204.9 187 61.5
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 5.0e-51 204.9 187 57.8
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.5e-51 204.5 206 54.4
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 6.5e-51 204.5 187 58.3
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 8.5e-51 204.1 187 57.2
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 8.5e-51 204.1 187 59.4
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 1.1e-50 203.8 194 57.7
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.5e-50 203.4 189 58.7
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.5e-50 203.4 194 55.7
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.5e-50 203.4 187 59.4
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.5e-50 203.4 194 56.7
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.9e-50 203.0 187 58.3
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 4.2e-50 201.8 184 58.2
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 7.2e-50 201.1 187 58.3
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-49 200.3 187 56.1
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.6e-49 199.9 187 55.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 2.1e-49 199.5 182 57.7
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.7e-49 199.1 183 56.8
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 2.7e-49 199.1 183 56.8
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 2.7e-49 199.1 201 55.2
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 3.6e-49 198.7 187 55.6
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 3.6e-49 198.7 194 55.7
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 3.6e-49 198.7 178 61.2
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 4.7e-49 198.4 177 61.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 8.0e-49 197.6 180 58.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 8.0e-49 197.6 183 56.8
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.0e-48 197.2 187 56.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.4e-48 196.8 187 55.1
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 4.0e-48 195.3 169 65.1
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 4.0e-48 195.3 204 53.9
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 4.0e-48 195.3 187 56.1
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.8e-48 194.1 194 55.2
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.2e-47 193.7 187 55.1
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.2e-47 193.7 187 55.1
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.5e-47 193.4 194 55.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 2.0e-47 193.0 187 55.1
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-47 193.0 190 54.7
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.0e-47 193.0 190 54.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.0e-47 193.0 187 55.1
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.6e-47 192.6 185 60.5
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.6e-47 192.6 179 60.9
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.4e-47 192.2 187 54.0
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 3.4e-47 192.2 187 54.5
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 5.7e-47 191.4 187 54.5
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-46 190.3 187 56.1
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.3e-46 190.3 187 53.5
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.7e-46 189.9 187 52.9
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 1.7e-46 189.9 180 58.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.8e-46 189.1 165 66.1
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 3.7e-46 188.7 187 56.1
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.1e-45 187.2 187 54.0
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 3.1e-45 185.7 240 47.5
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.7e-44 182.6 187 54.5
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 1.0e-43 180.6 152 62.5
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.3e-43 180.3 194 51.0
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.2e-41 173.7 186 51.6
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 1.6e-41 173.3 162 61.1
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 3.0e-40 169.1 194 53.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.8e-37 159.8 175 49.1
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.5e-36 155.6 186 45.7
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.5e-36 155.6 186 44.6
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 1.0e-35 154.1 153 52.9
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 5.0e-35 151.8 186 44.1
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 4.3e-34 148.7 90 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 1.2e-33 147.1 182 42.9
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-33 146.7 147 55.1
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.1e-32 142.5 120 62.5
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.4e-31 139.0 183 44.3
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.4e-29 133.7 90 71.1
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 5.4e-29 131.7 182 41.2
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 2.7e-28 129.4 187 45.5
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.5e-26 123.6 183 39.3
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.5e-26 123.6 90 63.3
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 4.0e-24 115.5 86 61.6
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 7.5e-23 111.3 84 70.2
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.1e-21 105.5 72 75.0
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.0e-19 100.9 124 46.8
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 3.3e-18 95.9 69 69.6
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 7.3e-18 94.7 69 69.6
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 2.8e-17 92.8 95 49.5
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 2.8e-17 92.8 95 49.5
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.1e-16 89.4 123 47.2
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 7.1e-13 78.2 72 61.1
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 4.6e-12 75.5 171 33.9
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.7e-11 73.6 65 53.8
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.3e-11 73.2 67 55.2
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-10 70.9 96 46.9
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 6.2e-09 65.1 106 37.7
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-08 63.5 37 83.8
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 4.4e-07 58.9 35 82.9
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 9.9e-07 57.8 40 67.5


User provided reference genes

Program Settings