Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 0.0e+00 1329.7 657 100.0
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 7.4e-289 996.9 678 76.4
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.1e-191 674.1 763 52.6
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.5e-177 627.1 755 53.2
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.1e-174 616.7 740 51.2
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 4.4e-116 422.9 722 40.3
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.7e-115 421.0 717 41.0
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 9.5e-111 405.2 748 39.3
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.7e-104 384.4 722 37.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.3e-104 384.0 750 37.9
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 8.6e-104 382.1 733 38.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 5.6e-103 379.4 742 39.6
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 5.2e-101 372.9 728 37.8
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 6.8e-101 372.5 807 35.3
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.2e-99 367.5 710 40.6
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 2.4e-98 364.0 687 38.4
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 6.0e-97 359.4 707 38.9
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 7.8e-97 359.0 756 37.3
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 3.3e-95 353.6 737 36.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 7.3e-95 352.4 670 37.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 9.5e-95 352.1 737 36.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 4.0e-93 346.7 392 49.2
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 8.3e-91 339.0 694 38.3
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.6e-89 334.7 701 37.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 3.5e-89 333.6 768 35.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.5e-89 333.6 728 36.7
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 4.6e-89 333.2 416 49.5
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.1e-85 322.0 718 36.5
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.5e-84 318.2 742 35.8
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 2.0e-84 317.8 730 34.9
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.4e-84 317.0 747 36.1
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 9.2e-82 308.9 776 35.4
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.2e-81 308.5 491 40.9
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.7e-81 307.4 698 35.0
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 2.5e-79 300.8 716 34.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.2e-78 298.5 440 45.0
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.2e-78 298.5 701 34.8
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 4.7e-78 296.6 696 35.5
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 6.2e-78 296.2 701 34.4
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.4e-77 295.0 701 34.7
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.8e-77 294.7 511 40.3
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 6.9e-77 292.7 753 33.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.2e-73 282.0 718 33.8
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.2e-73 282.0 755 33.8
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.3e-72 278.5 560 36.4
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.7e-72 278.1 662 34.6
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.3e-72 277.7 712 33.6
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.3e-71 273.9 759 32.5
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.3e-70 271.9 714 33.2
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.3e-70 271.9 768 31.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.1e-69 268.9 674 32.2
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.3e-67 261.9 504 37.3
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.9e-66 258.1 737 33.2
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 7.9e-65 252.7 698 31.8
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.8e-64 251.5 664 31.9
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.6e-63 246.5 404 41.1
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 5.6e-63 246.5 656 33.5
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 6.2e-62 243.0 698 31.5
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.4e-61 241.1 762 28.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.4e-61 241.1 763 30.4
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 4.0e-61 240.4 766 30.3
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.0e-61 239.2 674 30.9
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.2e-60 238.8 499 35.7
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 7.6e-60 236.1 433 40.2
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 8.4e-59 232.6 539 35.4
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.1e-58 232.3 550 35.3
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.5e-58 229.9 500 35.4
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.0e-56 225.7 454 36.8
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.3e-56 225.3 489 36.8
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.6e-55 219.2 428 40.4
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 3.7e-54 217.2 493 35.1
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 4.8e-54 216.9 526 34.0
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 4.8e-54 216.9 676 30.8
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 4.0e-53 213.8 440 38.6
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.2e-52 212.2 409 37.2
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 1.2e-52 212.2 540 31.9
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 8.4e-51 206.1 373 41.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.7e-49 201.1 515 33.8
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 6.0e-49 199.9 420 36.7
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 3.9e-48 197.2 336 38.1
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.9e-48 197.2 372 37.4
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.3e-46 192.2 333 40.2
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 8.2e-46 189.5 441 37.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.1e-45 189.1 685 30.1
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.0e-43 180.3 229 46.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.7e-39 166.8 426 32.9
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.8e-37 161.8 665 30.1
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.4e-37 161.4 238 44.5
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 8.5e-35 152.9 380 31.8
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.5e-34 151.4 318 35.5
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.2e-34 150.6 385 34.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 5.5e-34 150.2 251 39.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 5.5e-34 150.2 318 35.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 5.5e-34 150.2 506 30.0
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.0e-32 146.0 356 34.0
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.0e-32 144.4 519 27.7
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 6.7e-32 143.3 246 43.9
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 5.7e-31 140.2 240 40.8
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.7e-30 138.7 368 35.6
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 8.2e-30 136.3 384 32.3
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.1e-29 136.0 383 33.7
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.1e-29 134.4 472 30.1
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 5.3e-29 133.7 228 39.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.5e-28 130.6 350 32.6
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 5.0e-27 127.1 359 31.5
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 3.2e-26 124.4 390 33.3
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 6.1e-25 120.2 357 33.1
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.9e-24 117.5 322 31.7
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-23 115.5 380 30.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.8e-22 110.5 208 37.5
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 5.3e-21 107.1 343 28.9
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.3e-21 107.1 348 31.6
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 5.3e-21 107.1 343 28.9
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 5.3e-21 107.1 343 28.9
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.3e-21 107.1 348 31.6
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-20 105.9 342 31.3
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-20 105.9 348 29.0
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.2e-20 105.9 342 31.3
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.6e-20 105.5 350 28.9
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.6e-20 105.5 208 34.1
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.5e-20 104.4 366 27.3
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.0e-19 100.5 342 30.7
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.2e-17 95.9 227 31.7
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.0e-16 92.8 102 48.0
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.2e-14 85.1 258 30.2
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 2.2e-14 85.1 172 33.1
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 5.3e-13 80.5 282 29.1
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 5.3e-13 80.5 282 29.1
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.6e-12 79.0 290 24.5
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-12 78.6 205 31.7
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-11 75.5 91 40.7
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 1.5e-10 72.4 299 26.4
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 5.5e-10 70.5 409 24.2
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 2.1e-09 68.6 234 30.8
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.7e-09 68.2 72 38.9
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 2.7e-09 68.2 356 23.3
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.1e-09 67.0 202 30.7
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.8e-08 65.5 51 60.8
unitig_37.g12820 Utricularia gibba HOM05D007001 ORTHO05D005587 7.5e-07 60.1 85 34.1
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 9.8e-07 59.7 150 32.0
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 1.3e-06 59.3 128 32.0


User provided reference genes

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