Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0178600 Rhododendron simsii HOM05D006158 ORTHO05D007065 1.1e-81 306.6 157 100.0
vmacro02093 Vaccinium macrocarpon HOM05D006158 ORTHO05D007065 9.3e-65 250.4 137 89.1
CSS0017185 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 1.6e-64 249.6 137 88.3
CSS0043812 Camellia sinensis var. sinensis HOM05D006158 ORTHO05D007065 4.6e-64 248.1 137 87.6
Hma1.2p1_2192F.1_g316750 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 6.0e-64 247.7 155 81.3
Hma1.2p1_2496F.1_g323328 Hydrangea macrophylla HOM05D006158 ORTHO05D007065 6.0e-64 247.7 155 81.3
MELO3C023300.2 Cucumis melo HOM05D006158 ORTHO05D007065 4.3e-62 241.5 155 77.4
CsaV3_2G014760 Cucumis sativus L. HOM05D006158 ORTHO05D007065 4.3e-62 241.5 155 77.4
ClCG11G004360 Citrullus lanatus HOM05D006158 ORTHO05D007065 7.4e-62 240.7 155 77.4
Nitab4.5_0000336g0020 Nicotiana tabacum HOM05D006158 ORTHO05D007065 9.7e-62 240.4 155 77.4
Dinv42054 Davidia involucrata HOM05D006158 ORTHO05D007065 1.6e-61 239.6 137 86.1
Manes.11G086500 Manihot esculenta HOM05D006158 ORTHO05D007065 3.7e-61 238.4 137 83.9
Sed0010470 Sechium edule HOM05D006158 ORTHO05D007065 8.2e-61 237.3 155 75.5
MSTRG.20075 Avicennia marina HOM05D006158 ORTHO05D007065 1.1e-60 236.9 137 83.9
PGSC0003DMG400000731 Solanum tuberosum HOM05D006158 ORTHO05D007065 1.1e-60 236.9 137 83.2
Cpa.g.sc62.161 Carica papaya HOM05D006158 ORTHO05D007065 1.4e-60 236.5 137 82.5
Solyc01g109710.3 Solanum lycopersicum HOM05D006158 ORTHO05D007065 1.4e-60 236.5 137 82.5
Sopen01g051900 Solanum pennellii HOM05D006158 ORTHO05D007065 1.4e-60 236.5 137 82.5
Duzib132G0028 Durio zibethinus HOM05D006158 ORTHO05D007065 1.8e-60 236.1 137 84.7
Oeu020748.1 Olea europaea HOM05D006158 ORTHO05D007065 1.8e-60 236.1 137 83.2
Peaxi162Scf00684g00228 Petunia axillaris HOM05D006158 ORTHO05D007065 4.1e-60 235.0 137 82.5
CAN.G1412.17 Capsicum annuum HOM05D006158 ORTHO05D007065 6.9e-60 234.2 155 74.2
Gohir.D12G028800 Gossypium hirsutum HOM05D006158 ORTHO05D007065 6.9e-60 234.2 155 75.5
Thecc.02G083700 Theobroma cacao HOM05D006158 ORTHO05D007065 6.9e-60 234.2 137 81.8
CiPaw.06G134600 Carya illinoinensis HOM05D006158 ORTHO05D007065 1.2e-59 233.4 156 75.6
Oeu029148.1 Olea europaea HOM05D006158 ORTHO05D007065 1.2e-59 233.4 137 83.2
Gorai.008G029500 Gossypium raimondii HOM05D006158 ORTHO05D007065 2.0e-59 232.6 137 82.5
Lj1g0002606 Lotus japonicus HOM05D006158 ORTHO05D007065 2.0e-59 232.6 138 82.6
THA.LOC104824819 Tarenaya hassleriana HOM05D006158 ORTHO05D007065 2.0e-59 232.6 137 81.0
SGA_v2.0_scaffold32G13170 Striga asiatica HOM05D006158 ORTHO05D007065 2.6e-59 232.3 137 81.8
Medtr3g116830 Medicago truncatula HOM05D006158 ORTHO05D007065 1.3e-58 229.9 138 79.7
unitig_0.g63 Utricularia gibba HOM05D006158 ORTHO05D007065 1.3e-58 229.9 137 81.8
CiPaw.05G065900 Carya illinoinensis HOM05D006158 ORTHO05D007065 2.2e-58 229.2 156 74.4
Gohir.A12G029500 Gossypium hirsutum HOM05D006158 ORTHO05D007065 2.2e-58 229.2 137 81.0
Nn5g29641 Nelumbo nucifera HOM05D006158 ORTHO05D007065 2.9e-58 228.8 138 80.4
Potri.004G156200 Populus trichocarpa HOM05D006158 ORTHO05D007065 3.8e-58 228.4 137 79.6
VMungo1309G1281 Vigna mungo HOM05D006158 ORTHO05D007065 3.8e-58 228.4 137 77.4
CANSAT35G0650 Cannabis sativa HOM05D006158 ORTHO05D007065 5.0e-58 228.0 138 80.4
MBI16_g07736_MAGBIO Magnolia biondii HOM05D006158 ORTHO05D007065 5.0e-58 228.0 138 79.7
Cc02_g17430 Coffea canephora HOM05D006158 ORTHO05D007065 8.5e-58 227.3 137 80.3
Aa31LG7G14860 Aethionema arabicum HOM05D006158 ORTHO05D007065 1.1e-57 226.9 137 78.8
Psat5g004200 Pisum sativum HOM05D006158 ORTHO05D007065 1.1e-57 226.9 138 79.7
Carub.0004s0065 Capsella rubella HOM05D006158 ORTHO05D007065 1.4e-57 226.5 137 77.4
TAR381G1268 Trochodendron aralioides HOM05D006158 ORTHO05D007065 1.4e-57 226.5 137 79.6
C08p41330 Brassica napus HOM05D001159 ORTHO05D001712 1.9e-57 226.1 137 79.6
BcaB08g34988 Brassica carinata HOM05D006158 ORTHO05D007065 2.5e-57 225.7 137 78.1
A09p58080 Brassica napus HOM05D001159 ORTHO05D001712 2.5e-57 225.7 137 79.6
CARHR112610 Cardamine hirsuta HOM05D006158 ORTHO05D007065 3.2e-57 225.3 137 77.4
Sabra04G0104200 Salix brachista HOM05D006158 ORTHO05D007065 3.2e-57 225.3 137 77.4
arahy.Tifrunner.gnm1.ann1.VMSS78 Arachis hypogaea HOM05D006158 ORTHO05D007065 4.2e-57 224.9 138 79.7
arahy.Tifrunner.gnm1.ann1.VZ83MM Arachis hypogaea HOM05D006158 ORTHO05D007065 4.2e-57 224.9 138 79.7
Cfa004987 Carpinus fangiana HOM05D006158 ORTHO05D007065 4.2e-57 224.9 140 80.0
Glyma.04G012400 Glycine max HOM05D006158 ORTHO05D007065 4.2e-57 224.9 137 79.6
Nitab4.5_0002241g0040 Nicotiana tabacum HOM05D006158 ORTHO05D007065 4.2e-57 224.9 147 74.1
PGR042G1835 Punica granatum HOM05D006158 ORTHO05D007065 4.2e-57 224.9 157 70.7
TPR.G38099 Trifolium pratense HOM05D006158 ORTHO05D007065 4.2e-57 224.9 138 79.0
BcaC07g41131 Brassica carinata HOM05D006158 ORTHO05D007065 5.5e-57 224.6 137 79.6
Ca_15362_v3 Cicer arietinum L. HOM05D006158 ORTHO05D007065 7.2e-57 224.2 138 80.4
Duzib052G0490 Durio zibethinus HOM05D006158 ORTHO05D007065 7.2e-57 224.2 137 76.6
AT2G21620 Arabidopsis thaliana HOM05D006158 ORTHO05D007065 1.6e-56 223.0 137 75.9
Sabra09G0090100 Salix brachista HOM05D006158 ORTHO05D007065 2.1e-56 222.6 137 78.1
Migut.B00227 Erythranthe guttata HOM05D006158 ORTHO05D007065 3.6e-56 221.9 137 80.3
HanXRQChr09g0248171 Helianthus annuus HOM05D006158 ORTHO05D007065 3.6e-56 221.9 150 73.3
ECA240G2632 Erigeron canadensis HOM05D006158 ORTHO05D007065 4.6e-56 221.5 137 79.6
Thhalv10000338m.g Eutrema salsugineum HOM05D006158 ORTHO05D007065 4.6e-56 221.5 137 76.6
Potri.004G156100 Populus trichocarpa HOM05D006158 ORTHO05D007065 4.6e-56 221.5 137 74.5
SalBow6G0500 Salvia bowleyana HOM05D006158 ORTHO05D007065 6.1e-56 221.1 141 78.0
Sp4g00780 Schrenkiella parvula HOM05D006158 ORTHO05D007065 7.9e-56 220.7 155 69.7
Potri.009G117500 Populus trichocarpa HOM05D006158 ORTHO05D007065 1.3e-55 219.9 137 77.4
Lj9A374T110 Lonicera japonica HOM05D006158 ORTHO05D007065 1.8e-55 219.5 137 80.3
Aqoxy5G01600 Aquilegia oxysepala HOM05D006158 ORTHO05D007065 3.0e-55 218.8 139 77.0
BraA09t41196Z Brassica rapa HOM05D001159 ORTHO05D001712 3.0e-55 218.8 144 75.7
Phvul.009G023400 Phaseolus vulgaris HOM05D006158 ORTHO05D007065 3.0e-55 218.8 137 73.7
Sc18g0004420 Simmondsia chinensis HOM05D006158 ORTHO05D007065 5.1e-55 218.0 132 81.1
COL.COLO4_25946 Corchorus olitorius HOM05D006158 ORTHO05D007065 6.7e-55 217.6 137 77.4
Haze_02402 Corylus avellana HOM05D006158 ORTHO05D007065 1.5e-54 216.5 140 76.4
CDE05G2374 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 4.3e-54 214.9 137 75.2
Hund06240 Selenicereus undatus HOM05D006158 ORTHO05D007065 4.3e-54 214.9 138 76.8
GSVIVG01023785001 Vitis vinifera HOM05D006158 ORTHO05D007065 5.7e-54 214.5 156 69.2
EL10Ac9g21712 Beta vulgaris HOM05D006158 ORTHO05D007065 7.4e-54 214.2 138 77.5
BolC8t51695H Brassica oleracea HOM05D001159 ORTHO05D001712 7.4e-54 214.2 145 74.5
Gorai.012G155300 Gossypium raimondii HOM05D006158 ORTHO05D007065 1.3e-53 213.4 137 73.7
Gohir.A04G127801 Gossypium hirsutum HOM05D006158 ORTHO05D007065 1.6e-53 213.0 137 73.7
Gohir.D04G167000 Gossypium hirsutum HOM05D006158 ORTHO05D007065 2.2e-53 212.6 137 73.7
Eucgr.G01684 Eucalyptus grandis HOM05D006158 ORTHO05D007065 2.8e-53 212.2 140 73.6
PSO675G7009 Papaver somniferum HOM05D006158 ORTHO05D007065 4.8e-53 211.5 138 75.4
CDE11G1056 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 6.3e-53 211.1 137 74.5
Ciclev10029371m.g Citrus clementina HOM05D006158 ORTHO05D007065 1.4e-52 209.9 139 75.5
Ah.01g019280 Amaranthus hybridus HOM05D006158 ORTHO05D007065 7.7e-51 204.1 131 77.1
DCAR_028978 Daucus carota HOM05D006158 ORTHO05D007065 7.7e-51 204.1 165 66.1
Os02g0705400 Oryza sativa ssp. japonica HOM05D006158 ORTHO05D007065 3.8e-50 201.8 140 71.4
Zm00001eb252090 Zea mays HOM05D006158 ORTHO05D007065 6.5e-50 201.1 140 70.0
Lalb_Chr23g0265361 Lupinus albus HOM05D006158 ORTHO05D007065 4.2e-49 198.4 138 72.5
AL4G10820 Arabidopsis lyrata HOM05D006158 ORTHO05D007065 1.2e-48 196.8 186 55.4
AUR62011306 Chenopodium quinoa HOM05D006158 ORTHO05D007065 2.1e-48 196.1 132 72.7
FvH4_2g09040 Fragaria vesca HOM05D006158 ORTHO05D007065 2.7e-48 195.7 138 69.6
Prupe.8G095600 Prunus persica HOM05D006158 ORTHO05D007065 2.7e-48 195.7 138 70.3
FAN15G1568 Fragaria x ananassa HOM05D006158 ORTHO05D007065 3.6e-48 195.3 138 69.6
FAN27G0970 Fragaria x ananassa HOM05D006158 ORTHO05D007065 3.6e-48 195.3 138 69.6
HPP92_008313 Vanilla planifolia HOM05D006158 ORTHO05D007065 3.6e-48 195.3 157 65.0
RcHm_v2.0_Chr6g0264711 Rosa chinensis HOM05D006158 ORTHO05D007065 6.1e-48 194.5 138 71.0
Atru.chr5.3034 Acer truncatum HOM05D006158 ORTHO05D007065 3.0e-47 192.2 139 71.2
Nn1g04950 Nelumbo nucifera HOM05D006158 ORTHO05D007065 1.1e-46 190.3 138 68.1
DCAR_022980 Daucus carota HOM05D006158 ORTHO05D007065 2.6e-46 189.1 137 68.6
QL11p044699 Quercus lobata HOM05D006158 ORTHO05D007065 2.2e-45 186.0 139 68.3
QL11p044722 Quercus lobata HOM05D006158 ORTHO05D007065 2.2e-45 186.0 139 68.3
HPP92_004901 Vanilla planifolia HOM05D006158 ORTHO05D007065 6.9e-44 181.0 157 61.1
Dinv04691 Davidia involucrata HOM05D006158 ORTHO05D007065 9.1e-44 180.6 105 82.9
MD10G1073900 Malus domestica HOM05D006158 ORTHO05D007065 1.0e-42 177.2 138 63.8
Hund00258 Selenicereus undatus HOM05D006158 ORTHO05D007065 1.3e-42 176.8 137 64.2
SEGI_06830 Sequoiadendron giganteum HOM05D006158 ORTHO05D007065 1.4e-41 173.3 165 53.9
Sabra04G0104100 Salix brachista HOM05D006158 ORTHO05D007065 4.7e-40 168.3 105 72.4
DCAR_001571 Daucus carota HOM05D006158 ORTHO05D007065 5.2e-39 164.9 156 60.9
MD05G1064900 Malus domestica HOM05D006158 ORTHO05D007065 1.5e-38 163.3 138 63.0
TWI79G1412 Tripterygium wilfordii HOM05D006158 ORTHO05D007065 1.5e-38 163.3 139 62.6
HanXRQChr12g0376151 Helianthus annuus HOM05D006158 ORTHO05D007065 3.3e-38 162.2 137 60.6
ECA234G4498 Erigeron canadensis HOM05D006158 ORTHO05D007065 9.7e-38 160.6 137 61.3
Lsat_1_v5_gn_5_119101 Lactuca sativa HOM05D006158 ORTHO05D007065 7.7e-35 151.0 178 49.4
AUR62016751 Chenopodium quinoa HOM05D006158 ORTHO05D007065 1.2e-32 143.7 132 58.3
ATR0568G175 Amborella trichopoda HOM05D006158 ORTHO05D007065 1.8e-28 129.8 78 75.6
Pp3c13_4400 Physcomitrium patens HOM05D006158 ORTHO05D007065 1.0e-23 114.0 105 54.3
Mapoly0117s0006 Marchantia polymorpha HOM05D006158 ORTHO05D007065 3.1e-20 102.4 142 43.7
CDE05G0028 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 1.7e-18 96.7 72 68.1
Dinv01868 Davidia involucrata HOM05D006158 ORTHO05D007065 3.1e-12 75.9 47 78.7
MD05G1065000 Malus domestica HOM05D006158 ORTHO05D007065 9.2e-12 74.3 46 78.3
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 2.8e-08 62.8 54 64.8
Nitab4.5_0000308g0240 Nicotiana tabacum HOM05D006158 ORTHO05D007065 2.8e-08 62.8 59 62.7
arahy.Tifrunner.gnm1.ann1.KZ2IY9 Arachis hypogaea HOM05D006158 ORTHO05D007065 1.4e-07 60.5 73 47.9
EL10Ac9g20870 Beta vulgaris HOM05D006158 ORTHO05D007065 1.8e-07 60.1 37 75.7
SEGI_20690 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 2.6e-06 56.2 128 32.0


User provided reference genes

Program Settings