Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 6.0e-102 374.4 219 100.0
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.4e-95 353.2 229 93.0
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 4.6e-94 348.2 229 92.1
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-93 346.7 229 91.7
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.7e-93 346.3 229 90.8
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 5.1e-93 344.7 228 90.4
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 5.1e-93 344.7 230 90.4
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 6.6e-93 344.4 227 90.3
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.1e-92 343.6 229 90.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.1e-92 343.6 229 90.4
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.5e-92 343.2 230 90.0
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.9e-92 342.8 225 91.6
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.9e-92 342.8 229 90.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.5e-92 342.4 229 89.5
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.3e-92 342.0 230 90.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 3.3e-92 342.0 230 90.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.3e-92 342.0 230 90.0
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 4.3e-92 341.7 225 91.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 4.3e-92 341.7 229 89.5
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.3e-92 341.7 230 89.6
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 4.3e-92 341.7 229 90.0
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 9.6e-92 340.5 226 90.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.2e-91 340.1 230 89.6
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.2e-91 340.1 230 89.6
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.6e-91 339.7 225 91.1
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 6.2e-91 337.8 232 89.7
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 8.1e-91 337.4 229 88.6
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 8.1e-91 337.4 230 89.1
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.1e-90 337.0 229 90.0
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.4e-90 336.7 229 88.6
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.4e-90 335.9 228 88.6
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 3.1e-90 335.5 233 86.7
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 6.8e-90 334.3 224 89.7
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 8.9e-90 334.0 225 89.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.2e-89 333.6 224 89.3
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.2e-89 333.6 269 79.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.0e-89 332.8 223 89.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 4.4e-89 331.6 223 89.7
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 7.6e-89 330.9 223 88.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 1.3e-88 330.1 222 89.6
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.3e-88 330.1 223 89.2
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 2.9e-88 328.9 222 89.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 2.9e-88 328.9 223 89.2
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 8.4e-88 327.4 223 87.9
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.4e-87 326.6 223 87.9
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 89.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 87.9
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 89.7
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 2.4e-87 325.9 223 87.9
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 2.4e-87 325.9 223 89.2
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 87.9
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.2e-87 325.5 223 88.3
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 4.2e-87 325.1 225 89.3
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 4.2e-87 325.1 228 85.1
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 5.4e-87 324.7 223 88.3
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 7.1e-87 324.3 223 88.8
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 9.3e-87 323.9 224 88.4
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.2e-86 323.6 195 95.9
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 87.9
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 2.1e-86 322.8 223 88.3
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.1e-86 322.8 192 97.4
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-86 321.6 223 87.0
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-86 321.6 224 87.9
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.6e-86 321.6 224 87.9
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 4.6e-86 321.6 223 87.0
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 4.6e-86 321.6 222 86.9
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 6.0e-86 321.2 223 87.0
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 6.0e-86 321.2 223 87.4
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 7.8e-86 320.9 221 86.9
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.0e-85 320.5 223 87.0
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.0e-85 320.5 223 87.0
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 1.0e-85 320.5 223 87.0
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.3e-85 320.1 224 87.5
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.7e-85 319.7 225 88.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.7e-85 319.7 223 86.5
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.7e-85 319.7 201 93.0
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.3e-85 319.3 222 86.9
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.3e-85 319.3 236 84.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 5.1e-85 318.2 223 85.2
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 5.1e-85 318.2 223 85.2
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 5.1e-85 318.2 223 85.2
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 6.6e-85 317.8 221 86.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.7e-85 317.4 223 85.2
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.7e-85 317.4 223 85.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 8.7e-85 317.4 219 88.1
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-84 317.0 227 85.5
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 1.1e-84 317.0 223 85.7
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-84 317.0 223 86.5
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.1e-84 317.0 223 85.7
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 84.8
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 84.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 84.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 84.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 84.8
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 2.5e-84 315.8 225 86.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.5e-84 315.8 223 85.7
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 3.3e-84 315.5 223 84.8
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 3.3e-84 315.5 223 84.8
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 3.3e-84 315.5 223 84.8
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.3e-84 315.5 223 85.2
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 4.3e-84 315.1 223 84.3
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 4.3e-84 315.1 223 84.3
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 5.6e-84 314.7 223 84.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 5.6e-84 314.7 221 86.0
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 5.6e-84 314.7 223 84.8
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 5.6e-84 314.7 223 84.3
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.6e-84 314.7 225 85.3
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.6e-84 314.7 225 85.3
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 9.6e-84 313.9 223 84.3
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.3e-83 313.5 223 85.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.3e-83 313.5 220 86.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.6e-83 313.2 225 85.3
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.1e-83 312.8 223 83.9
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.6e-83 312.0 225 84.9
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.8e-83 311.6 227 83.7
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 8.1e-83 310.8 224 83.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 8.1e-83 310.8 229 83.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 1.1e-82 310.5 226 85.0
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.1e-82 310.5 276 65.2
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 1.8e-82 309.7 227 83.7
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.8e-81 304.7 224 82.6
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 9.9e-81 303.9 185 94.6
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 3.8e-80 302.0 198 89.9
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 1.4e-79 300.1 201 88.6
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 2.4e-79 299.3 179 97.8
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 5.4e-79 298.1 224 81.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 9.3e-79 297.4 185 93.0
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 9.3e-79 297.4 192 91.1
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.6e-78 295.0 184 94.0
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.2e-75 284.6 185 89.7
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.8e-74 283.1 229 79.5
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 5.3e-74 281.6 168 97.6
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.5e-73 280.0 193 89.6
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.5e-73 280.0 197 87.3
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.3e-72 276.9 206 83.0
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 3.5e-70 268.9 191 87.4
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 4.6e-70 268.5 221 74.7
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-68 261.9 204 77.5
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-68 261.9 204 78.4
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.4e-66 256.9 169 88.8
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.8e-66 256.5 166 89.2
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 2.4e-66 256.1 214 75.2
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 8.4e-64 247.7 148 99.3
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-63 247.3 180 82.2
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.9e-62 241.1 220 65.5
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 3.0e-61 239.2 148 92.6
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 5.1e-61 238.4 187 77.5
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.4e-58 230.3 178 72.5
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.0e-57 226.5 192 70.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 7.6e-57 224.6 194 73.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.2e-56 223.0 137 97.1
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 9.3e-55 217.6 154 73.4
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 7.9e-54 214.5 166 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.6e-51 206.8 153 83.0
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.2e-51 204.5 132 95.5
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.9e-50 201.4 238 56.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.5e-49 200.3 162 75.9
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 7.9e-46 188.0 138 73.2
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.0e-45 187.6 151 70.2
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 7.4e-44 181.4 93 92.5
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 2.8e-35 152.9 124 66.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 5.9e-33 145.2 127 61.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 1.4e-29 134.0 225 44.4
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.2e-23 112.8 185 42.2
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.3e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.5e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.7e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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