Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0174800 Rhododendron simsii HOM05D007227 ORTHO05D002252 4.7e-64 247.7 121 100.0
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 5.4e-20 101.3 118 48.3
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.5e-19 98.6 122 48.4
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 8.6e-18 94.0 122 48.4
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.2e-14 83.6 96 46.9
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.2e-13 79.3 87 46.0
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 3.7e-13 78.6 86 50.0
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 3.5e-11 72.0 96 36.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 4.6e-11 71.6 80 47.5
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 4.6e-11 71.6 77 48.1
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 7.8e-11 70.9 80 46.2
vmacro17500 Vaccinium macrocarpon HOM05D017364 ORTHO05D002252 2.3e-10 69.3 77 46.8
CSS0038929 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 3.9e-10 68.6 72 45.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 5.1e-10 68.2 72 50.0
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 6.6e-10 67.8 80 47.5
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 6.6e-10 67.8 84 45.2
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.1e-09 67.0 76 46.1
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.5e-09 66.6 76 47.4
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.5e-09 66.6 76 47.4
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 2.5e-09 65.9 109 35.8
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.3e-09 65.1 75 45.3
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 4.3e-09 65.1 75 44.0
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 9.5e-09 63.9 76 44.7
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 9.5e-09 63.9 78 46.2
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.2e-08 63.5 69 47.8
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.2e-08 63.5 69 47.8
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.6e-08 63.2 74 45.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 2.8e-08 62.4 79 40.5
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 3.6e-08 62.0 115 36.5
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 3.6e-08 62.0 81 45.7
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.2e-08 61.2 73 42.5
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 8.1e-08 60.8 79 39.2
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 8.1e-08 60.8 108 38.0
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 8.1e-08 60.8 114 34.2
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.1e-07 60.5 68 44.1
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 1.1e-07 60.5 73 41.1
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 1.4e-07 60.1 73 41.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.4e-07 60.1 73 41.1
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 1.4e-07 60.1 74 40.5
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.8e-07 59.7 71 42.3
Potri.004G153200 Populus trichocarpa HOM05D007227 ORTHO05D002252 2.3e-07 59.3 77 42.9
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 2.3e-07 59.3 70 42.9
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 3.1e-07 58.9 82 42.7
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-07 58.9 74 39.2
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.0e-07 58.5 80 40.0
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.0e-07 58.5 80 40.0
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 4.0e-07 58.5 80 40.0
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.2e-07 58.2 64 46.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 5.2e-07 58.2 70 44.3
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 5.2e-07 58.2 88 36.4
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 6.8e-07 57.8 83 42.2
Ciclev10029608m.g Citrus clementina HOM05D007227 ORTHO05D002252 8.9e-07 57.4 82 39.0
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 8.9e-07 57.4 74 43.2
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 8.9e-07 57.4 75 40.0
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.2e-06 57.0 78 38.5
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.2e-06 57.0 73 46.6
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.2e-06 57.0 73 46.6
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.2e-06 57.0 70 42.9
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.2e-06 57.0 86 38.4
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.2e-06 57.0 68 44.1
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.5e-06 56.6 70 42.9
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.5e-06 56.6 86 37.2
Potri.009G114400 Populus trichocarpa HOM05D007227 ORTHO05D002252 1.5e-06 56.6 84 40.5
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 2.0e-06 56.2 121 34.7
HanXRQChr16g0524731 Helianthus annuus HOM05D017364 ORTHO05D002252 2.0e-06 56.2 75 42.7
Nitab4.5_0001794g0120 Nicotiana tabacum HOM05D007227 ORTHO05D002252 2.0e-06 56.2 98 33.7
HanXRQChr01g0007701 Helianthus annuus HOM05D017364 ORTHO05D002252 2.6e-06 55.8 75 42.7
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.6e-06 55.8 72 38.9
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 3.4e-06 55.5 81 42.0
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.4e-06 55.5 80 41.2
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 3.4e-06 55.5 77 40.3
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.4e-06 55.1 90 37.8
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 5.8e-06 54.7 115 33.9
Cc07_g14570 Coffea canephora HOM05D007227 ORTHO05D002252 5.8e-06 54.7 85 36.5
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 5.8e-06 54.7 84 36.9
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 5.8e-06 54.7 84 36.9
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 7.6e-06 54.3 64 37.5
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 7.6e-06 54.3 75 34.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 7.6e-06 54.3 80 40.0
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 7.6e-06 54.3 74 36.5


User provided reference genes

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