Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 2340.1 1178 100.0
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1933.3 1234 82.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1802.3 1198 77.3
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1755.3 1198 75.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1718.7 1195 74.7
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1687.2 1200 72.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1204 71.6
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1199 72.3
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1204 71.0
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1207 70.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1207 70.8
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1202 71.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1664.0 1204 70.7
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1202 71.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1206 71.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1662.9 1212 70.7
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1199 71.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1198 71.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1657.9 1204 71.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1204 70.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1208 70.3
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1206 71.1
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1650.6 1202 71.0
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1205 70.7
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1195 71.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1199 70.9
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1644.4 1196 71.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1641.3 1198 70.4
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1641.3 1195 70.6
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1208 70.4
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1196 70.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1198 70.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1635.2 1196 70.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1634.4 1196 70.6
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1633.2 1220 70.0
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1628.2 1206 70.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1199 70.7
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1199 70.6
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1615.5 1204 69.7
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1205 69.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1200 69.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1609.7 1208 70.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1206 69.6
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1201 69.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1605.5 1200 68.8
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1604.7 1198 69.4
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1205 69.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1202 68.5
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1243 67.7
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1215 69.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1595.9 1197 69.1
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1194 70.0
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1201 68.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1589.3 1205 68.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1203 68.7
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1585.9 1196 69.5
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1128 71.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1200 68.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 1200 68.0
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1198 68.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1195 68.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1573.5 1294 64.8
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1235 66.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 1171 69.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 1201 67.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1197 67.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1565.8 1203 66.8
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1557.3 1122 70.2
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1551.2 1196 67.0
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1549.3 1143 69.3
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1547.3 1207 66.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1547.3 1203 66.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1546.9 1207 66.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1182 67.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1200 66.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1542.3 1197 66.4
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1541.6 1203 66.4
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1538.5 1197 66.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1537.7 1158 68.0
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1535.0 1158 68.0
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1532.3 1147 68.4
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1532.3 1147 68.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1532.3 1199 67.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1531.5 1147 68.1
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1531.2 1196 66.3
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1530.4 1201 66.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1148 68.2
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1196 66.4
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1200 66.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1528.5 1202 66.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1527.7 1207 65.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1523.1 1196 66.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1523.1 1181 66.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1512.7 1205 65.3
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1512.3 1227 64.9
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1511.9 1179 66.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1509.6 1111 69.1
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1506.1 1228 64.7
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1505.7 1179 65.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1503.0 1195 64.6
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1501.1 1178 65.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1500.3 1195 64.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1489.9 1195 65.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1488.8 1195 64.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1479.5 1147 66.3
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 1078 67.2
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1418.3 1235 61.7
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1414.1 1127 65.7
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1398.6 1029 69.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1397.5 984 73.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1382.5 1142 61.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1380.5 1153 64.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1341.6 1134 59.9
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1302.3 1073 61.7
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1297.0 1227 58.5
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1295.8 1227 58.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1245.3 911 69.7
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1192.9 1141 55.4
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1155.2 712 80.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1146.0 957 63.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1142.5 1177 53.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1105.5 858 67.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.8e-301 1039.6 1146 48.3
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 3.0e-301 1038.9 833 64.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 2.8e-299 1032.3 1154 47.1
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.0e-293 1012.3 1111 48.5
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.2e-287 991.1 849 61.5
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 5.6e-271 938.3 992 54.3
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.4e-268 929.1 992 51.8
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.6e-256 887.9 684 69.7
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-254 884.0 585 72.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.7e-240 837.0 887 50.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 3.5e-225 786.2 1118 39.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.0e-220 770.4 455 85.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.7e-192 675.6 781 47.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 8.2e-190 668.7 752 51.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 4.0e-184 649.8 423 74.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 5.2e-184 649.4 734 49.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.9e-180 636.0 507 66.7
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-171 608.2 407 73.7
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-165 588.6 625 55.4
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.6e-161 573.5 481 64.7
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.1e-153 547.7 1034 36.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 9.5e-146 522.3 458 62.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.7e-140 504.2 407 65.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 4.8e-129 466.8 503 50.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.4e-120 438.0 308 69.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.9e-118 431.0 329 66.0
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 7.9e-116 422.9 498 50.2
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.1e-104 384.4 291 69.1
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.8e-97 360.5 1104 28.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.1e-93 349.4 1028 28.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 7.4e-90 336.7 226 75.7
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.5e-85 320.5 1045 26.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.2e-81 306.6 1003 27.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.2e-78 298.5 159 86.8
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.7e-55 221.9 290 47.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 6.6e-46 190.7 123 78.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-45 189.9 208 50.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-44 186.0 164 58.5
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 2.8e-44 185.3 219 52.1
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 4.7e-44 184.5 331 33.5
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 8.0e-44 183.7 891 22.7
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.6e-42 178.7 153 66.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.0e-40 170.6 150 57.3
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 2.1e-39 169.1 276 38.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.4e-35 156.4 149 57.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.0e-34 152.5 468 26.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.0e-34 152.5 134 61.9
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.1e-32 144.8 162 43.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.4e-27 129.8 431 26.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.4e-24 119.8 296 33.1
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 3.0e-22 112.1 99 56.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.5e-21 109.8 111 49.5
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-19 103.6 82 67.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 6.9e-19 100.9 296 24.3
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.1e-12 79.3 107 43.9
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.6e-12 78.6 172 39.5
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 4.8e-12 78.2 56 66.1
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-09 70.1 79 50.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.7e-09 69.7 43 74.4
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 6.4e-09 67.8 72 47.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 5.4e-08 64.7 36 80.6
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 6.7e-06 57.8 41 68.3


User provided reference genes

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