Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 4120.5 2077 100.0
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 3319.3 2114 81.5
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2749.2 2035 71.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2549.6 2033 66.4
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2518.4 2022 65.4
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2271.1 2050 59.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2201.4 2023 58.2
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2187.9 2041 56.6
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2119.0 2072 56.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2100.5 2034 56.5
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2064.7 2030 55.7
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2041.5 2031 54.6
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2038.1 2032 54.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2033.1 2055 55.3
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2023.1 2042 55.2
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2018.4 2033 54.8
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2015.7 2041 54.8
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2013.8 2042 54.4
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2013.8 2039 54.0
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2012.7 2030 54.7
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2012.3 2018 54.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2010.7 2047 54.6
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2008.4 2011 55.4
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2000.7 2030 53.9
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2000.7 2032 54.6
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1992.2 2034 53.3
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1984.5 2040 52.7
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1961.0 2037 53.1
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1956.0 1993 55.3
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1952.9 2033 52.4
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1946.8 2041 53.7
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1941.0 2026 53.0
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1939.5 2060 51.8
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1932.9 2045 52.0
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1911.3 2046 51.8
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1897.9 2012 52.1
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1885.2 2025 52.3
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1881.3 2041 51.4
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1865.5 2075 50.5
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1862.8 2023 51.6
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1833.9 1953 52.2
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1833.2 2052 51.4
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1814.3 2045 49.6
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1802.3 2045 49.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1795.4 2035 49.9
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1792.7 2031 49.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1789.2 2037 49.0
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1788.9 2028 50.2
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1783.5 2031 49.2
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1780.0 2034 48.9
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1778.1 2017 49.5
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1775.4 2057 49.6
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1757.3 2014 49.8
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1742.6 1964 50.5
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1741.9 2038 48.6
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1741.5 2040 48.4
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1737.2 2040 48.5
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1736.5 2043 48.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1731.1 2081 48.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1720.7 2044 48.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1692.9 2031 48.8
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1687.9 2057 47.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1682.5 1970 48.6
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1672.5 2038 47.3
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1661.0 2047 47.1
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1661.0 2008 47.8
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1659.8 1950 48.4
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1653.3 2020 47.0
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1653.3 2027 47.4
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1645.9 2023 47.9
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1643.6 1947 48.6
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1636.3 2030 46.8
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1635.2 2035 46.9
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1631.3 1753 52.3
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1622.1 2031 46.7
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1619.8 2031 46.6
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1619.4 2044 46.6
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1619.4 1743 52.2
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1607.4 2031 46.5
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1605.9 2023 46.6
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1595.9 2029 46.0
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1587.4 2034 46.0
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1582.8 2142 45.1
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1581.6 2041 46.0
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1580.8 2034 46.1
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1580.8 2034 46.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1573.5 2041 45.7
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1573.1 2034 45.9
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1439.9 1803 45.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1383.2 1486 50.9
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1377.1 1486 50.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1351.3 2116 40.9
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1293.5 1720 45.2
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1283.5 1750 44.0
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1250.0 2027 39.2
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1146.3 1216 51.2
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1142.5 2050 36.9
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 1.8e-285 987.3 2147 33.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.0e-271 940.6 1689 36.7
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 3.3e-258 896.7 1539 37.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 9.6e-234 815.5 2180 30.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 5.5e-229 799.7 2015 32.2
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.9e-215 753.1 1152 43.1
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.0e-207 728.0 2098 30.5
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 5.3e-192 676.8 650 58.6
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 6.3e-185 653.3 680 54.4
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.2e-172 612.5 439 72.9
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 6.2e-156 557.0 1755 28.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 7.5e-154 550.1 1224 33.3
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 3.9e-142 511.1 1908 26.1
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.6e-127 462.6 359 68.0
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.6e-126 457.2 409 58.4
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-125 456.1 377 64.7
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 6.0e-111 407.5 403 53.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.6e-108 399.4 273 74.7
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.5e-101 375.6 273 68.9
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.1e-83 317.0 513 40.5
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 7.0e-83 314.3 275 61.8
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 6.1e-79 301.2 198 73.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 7.7e-66 257.7 385 41.3
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.9e-56 226.5 231 53.2
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.6e-55 223.4 190 60.5
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 8.0e-55 221.1 170 63.5
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.5e-42 179.1 319 37.9
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.9e-35 156.8 369 32.0
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 8.6e-33 147.9 83 81.9
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.6e-29 136.3 176 46.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.9e-28 132.9 406 26.8
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 2.7e-26 126.3 270 33.3
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 7.8e-26 124.8 67 89.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.3e-25 123.2 67 88.1
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.8e-23 116.3 234 34.2
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.7e-23 115.5 64 89.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 4.0e-22 112.5 68 80.9
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 8.9e-22 111.3 113 60.2
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-21 110.9 581 21.0
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 3.4e-21 109.4 106 55.7
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.2e-20 106.7 68 73.5
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-20 105.5 101 49.5
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 4.8e-15 89.0 56 78.6
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.3e-14 85.5 63 65.1
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 7.1e-11 75.1 139 36.0
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 6.2e-07 62.0 46 58.7
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.0e-06 59.3 57 49.1


User provided reference genes

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