Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0164200 Rhododendron simsii HOM05D000400 ORTHO05D000575 1.5e-52 209.1 101 100.0
vmacro02032 Vaccinium macrocarpon HOM05D000400 ORTHO05D000575 1.6e-25 119.4 168 45.2
Rhsim11G0164100 Rhododendron simsii HOM05D000400 ORTHO05D000575 6.1e-25 117.5 183 43.2
Rhsim11G0164400 Rhododendron simsii HOM05D000400 ORTHO05D000575 7.9e-25 117.1 165 45.5
Lj9A356T49 Lonicera japonica HOM05D000400 ORTHO05D000575 1.7e-22 109.4 104 55.8
CSS0027047 Camellia sinensis var. sinensis HOM05D000400 ORTHO05D000575 5.3e-21 104.4 163 40.5
CSS0049605 Camellia sinensis var. sinensis HOM05D000400 ORTHO05D000575 5.3e-21 104.4 163 40.5
Peaxi162Scf00016g02034 Petunia axillaris HOM05D000400 ORTHO05D000575 6.9e-21 104.0 152 41.4
Sopen01g050070 Solanum pennellii HOM05D000400 ORTHO05D000575 9.1e-21 103.6 160 40.0
Solyc01g107900.3 Solanum lycopersicum HOM05D000400 ORTHO05D000575 2.6e-20 102.1 160 40.0
Ciclev10029245m.g Citrus clementina HOM05D000400 ORTHO05D000575 4.5e-20 101.3 161 40.4
CiPaw.05G008300 Carya illinoinensis HOM05D000400 ORTHO05D000575 1.3e-19 99.8 162 38.9
Peaxi162Scf00016g02032 Petunia axillaris HOM05D000400 ORTHO05D000575 1.3e-19 99.8 160 40.0
CAN.G1231.35 Capsicum annuum HOM05D000400 ORTHO05D000575 2.9e-19 98.6 161 39.1
Cfa004545 Carpinus fangiana HOM05D000400 ORTHO05D000575 3.8e-19 98.2 161 39.1
Hma1.2p1_0370F.1_g137600 Hydrangea macrophylla HOM05D000400 ORTHO05D000575 3.8e-19 98.2 162 38.9
PGSC0003DMG400025881 Solanum tuberosum HOM05D000400 ORTHO05D000575 5.0e-19 97.8 160 38.8
SGA_v2.0_scaffold393G50701 Striga asiatica HOM05D000400 ORTHO05D000575 5.0e-19 97.8 161 40.4
vmacro02035 Vaccinium macrocarpon HOM05D000400 ORTHO05D000575 5.0e-19 97.8 159 41.5
Duzib052G0248 Durio zibethinus HOM05D000400 ORTHO05D000575 1.1e-18 96.7 161 40.4
AUR62010250 Chenopodium quinoa HOM05D000400 ORTHO05D000575 4.2e-18 94.7 116 45.7
Atru.chr5.2644 Acer truncatum HOM05D000400 ORTHO05D000575 5.5e-18 94.4 162 36.4
ClCG02G006050 Citrullus lanatus HOM05D000400 ORTHO05D000575 5.5e-18 94.4 152 40.1
Cc02_g18990 Coffea canephora HOM05D000400 ORTHO05D000575 7.2e-18 94.0 160 36.2
Duzib132G0022 Durio zibethinus HOM05D000400 ORTHO05D000575 7.2e-18 94.0 163 38.7
Lj5A211G75 Lonicera japonica HOM05D000400 ORTHO05D000575 7.2e-18 94.0 165 36.4
Atru.chr5.2650 Acer truncatum HOM05D000400 ORTHO05D000575 9.4e-18 93.6 162 36.4
MSTRG.27736 Avicennia marina HOM05D000400 ORTHO05D000575 9.4e-18 93.6 160 38.8
DCAR_022011 Daucus carota HOM05D000400 ORTHO05D000575 9.4e-18 93.6 161 37.9
ECA234G2821 Erigeron canadensis HOM05D000400 ORTHO05D000575 9.4e-18 93.6 163 37.4
MSTRG.20170 Avicennia marina HOM05D000400 ORTHO05D000575 1.2e-17 93.2 162 40.1
Lsat_1_v5_gn_5_115640 Lactuca sativa HOM05D000400 ORTHO05D000575 1.2e-17 93.2 164 37.2
Sed0017015 Sechium edule HOM05D000400 ORTHO05D000575 1.6e-17 92.8 163 39.3
TWI79G1608 Tripterygium wilfordii HOM05D000400 ORTHO05D000575 1.6e-17 92.8 161 36.6
ECA236G1888 Erigeron canadensis HOM05D000400 ORTHO05D000575 2.1e-17 92.4 161 37.3
Gohir.D13G040600 Gossypium hirsutum HOM05D000400 ORTHO05D000575 2.1e-17 92.4 163 37.4
Gorai.013G045500 Gossypium raimondii HOM05D000400 ORTHO05D000575 2.1e-17 92.4 163 37.4
Oeu010383.1 Olea europaea HOM05D000400 ORTHO05D000575 2.1e-17 92.4 161 39.1
vmacro02030 Vaccinium macrocarpon HOM05D000400 ORTHO05D000575 2.1e-17 92.4 161 42.2
MSTRG.5356 Avicennia marina HOM05D000400 ORTHO05D000575 3.6e-17 91.7 161 37.9
GSVIVG01031713001 Vitis vinifera HOM05D000400 ORTHO05D000575 3.6e-17 91.7 164 36.0
HanXRQChr10g0301821 Helianthus annuus HOM05D000400 ORTHO05D000575 4.7e-17 91.3 160 36.2
SalBow3G3113 Salvia bowleyana HOM05D000400 ORTHO05D000575 4.7e-17 91.3 161 37.3
Gohir.A03G188000 Gossypium hirsutum HOM05D000400 ORTHO05D000575 7.9e-17 90.5 162 37.7
Gohir.D02G208800 Gossypium hirsutum HOM05D000400 ORTHO05D000575 7.9e-17 90.5 162 37.7
Gorai.005G236800 Gossypium raimondii HOM05D000400 ORTHO05D000575 7.9e-17 90.5 162 37.7
QL11p034875 Quercus lobata HOM05D000400 ORTHO05D000575 7.9e-17 90.5 163 37.4
Thecc.02G103500 Theobroma cacao HOM05D000400 ORTHO05D000575 1.0e-16 90.1 160 38.8
TAR625G0973 Trochodendron aralioides HOM05D000400 ORTHO05D000575 1.0e-16 90.1 162 35.8
Potri.001G304600 Populus trichocarpa HOM05D000400 ORTHO05D000575 1.4e-16 89.7 163 38.0
Rhsim11G0164300 Rhododendron simsii HOM05D000400 ORTHO05D000575 1.4e-16 89.7 49 89.8
arahy.Tifrunner.gnm1.ann1.V10K31 Arachis hypogaea HOM05D000400 ORTHO05D000575 1.8e-16 89.4 151 39.7
MD05G1084200 Malus domestica HOM05D000400 ORTHO05D000575 1.8e-16 89.4 161 37.9
arahy.Tifrunner.gnm1.ann1.VU0ITX Arachis hypogaea HOM05D000400 ORTHO05D000575 2.3e-16 89.0 151 39.1
CsaV3_7G008480 Cucumis sativus L. HOM05D000400 ORTHO05D000575 2.3e-16 89.0 160 38.1
Oeu013726.1 Olea europaea HOM05D000400 ORTHO05D000575 2.3e-16 89.0 161 34.2
vmacro02029 Vaccinium macrocarpon HOM05D000400 ORTHO05D000575 2.3e-16 89.0 58 75.9
Lsat_1_v5_gn_0_4181 Lactuca sativa HOM05D000400 ORTHO05D000575 3.9e-16 88.2 165 35.8
Sed0012234 Sechium edule HOM05D000400 ORTHO05D000575 3.9e-16 88.2 162 37.7
FvH4_2g05740 Fragaria vesca HOM05D000400 ORTHO05D000575 5.1e-16 87.8 164 36.6
FAN15G2449 Fragaria x ananassa HOM05D000400 ORTHO05D000575 5.1e-16 87.8 164 36.6
FAN20G1370 Fragaria x ananassa HOM05D000400 ORTHO05D000575 5.1e-16 87.8 164 36.6
FAN24G1815 Fragaria x ananassa HOM05D000400 ORTHO05D000575 5.1e-16 87.8 164 36.6
FAN27G0549 Fragaria x ananassa HOM05D000400 ORTHO05D000575 5.1e-16 87.8 164 36.6
Nn5g30353 Nelumbo nucifera HOM05D000400 ORTHO05D000575 5.1e-16 87.8 162 38.9
TWI79G1036 Tripterygium wilfordii HOM05D000400 ORTHO05D000575 5.1e-16 87.8 161 34.2
MELO3C018460.2 Cucumis melo HOM05D000400 ORTHO05D000575 6.7e-16 87.4 160 36.9
Gohir.D02G209000 Gossypium hirsutum HOM05D000400 ORTHO05D000575 6.7e-16 87.4 162 35.8
Gorai.005G237000 Gossypium raimondii HOM05D000400 ORTHO05D000575 6.7e-16 87.4 162 35.8
HanXRQChr04g0128131 Helianthus annuus HOM05D000400 ORTHO05D000575 6.7e-16 87.4 162 35.8
TAR625G1536 Trochodendron aralioides HOM05D000400 ORTHO05D000575 6.7e-16 87.4 161 37.3
Manes.07G077200 Manihot esculenta HOM05D000400 ORTHO05D000575 8.8e-16 87.0 161 36.6
PSO675G8694 Papaver somniferum HOM05D000400 ORTHO05D000575 1.1e-15 86.7 63 66.7
Sabra16G0191100 Salix brachista HOM05D000400 ORTHO05D000575 1.1e-15 86.7 163 35.6
HanXRQChr16g0509941 Helianthus annuus HOM05D000400 ORTHO05D000575 1.5e-15 86.3 164 36.6
Prupe.8G128500 Prunus persica HOM05D000400 ORTHO05D000575 1.5e-15 86.3 167 36.5
Prupe.8G128900 Prunus persica HOM05D000400 ORTHO05D000575 1.5e-15 86.3 167 36.5
Prupe.8G129100 Prunus persica HOM05D000400 ORTHO05D000575 2.0e-15 85.9 163 37.4
Phvul.002G054200 Phaseolus vulgaris HOM05D000400 ORTHO05D000575 2.6e-15 85.5 164 35.4
PSO063G4554 Papaver somniferum HOM05D000400 ORTHO05D000575 3.3e-15 85.1 64 65.6
PSO675G4998 Papaver somniferum HOM05D000400 ORTHO05D000575 3.3e-15 85.1 63 65.1
PSO675G6513 Papaver somniferum HOM05D000400 ORTHO05D000575 3.3e-15 85.1 63 65.1
Gohir.A03G188200 Gossypium hirsutum HOM05D000400 ORTHO05D000575 4.4e-15 84.7 162 35.8
Lsat_1_v5_gn_5_115600 Lactuca sativa HOM05D000400 ORTHO05D000575 5.7e-15 84.3 162 35.8
TPR.G21600 Trifolium pratense HOM05D000400 ORTHO05D000575 5.7e-15 84.3 164 33.5
COL.COLO4_32630 Corchorus olitorius HOM05D000400 ORTHO05D000575 7.4e-15 84.0 161 37.9
Glyma.07G000300 Glycine max HOM05D000400 ORTHO05D000575 1.3e-14 83.2 164 33.5
RcHm_v2.0_Chr6g0256641 Rosa chinensis HOM05D000400 ORTHO05D000575 1.3e-14 83.2 164 35.4
Medtr5g004770 Medicago truncatula HOM05D000400 ORTHO05D000575 2.2e-14 82.4 164 34.1
CANSAT25G2193 Cannabis sativa HOM05D000400 ORTHO05D000575 2.8e-14 82.0 63 63.5
SEGI_08125 Sequoiadendron giganteum HOM05D000400 ORTHO05D000575 2.8e-14 82.0 62 61.3
Actinidia12935 Actinidia chinensis HOM05D000400 ORTHO05D000575 3.7e-14 81.6 53 77.4
Lalb_Chr05g0210741 Lupinus albus HOM05D000400 ORTHO05D000575 3.7e-14 81.6 161 32.9
PSO675G0493 Papaver somniferum HOM05D000400 ORTHO05D000575 3.7e-14 81.6 62 64.5
Prupe.8G129000 Prunus persica HOM05D000400 ORTHO05D000575 4.8e-14 81.3 150 38.0
VMungo1215G2505 Vigna mungo HOM05D000400 ORTHO05D000575 4.8e-14 81.3 164 34.8
PSO675G7915 Papaver somniferum HOM05D000400 ORTHO05D000575 6.3e-14 80.9 63 61.9
SalBow6G3686 Salvia bowleyana HOM05D000400 ORTHO05D000575 6.3e-14 80.9 162 36.4
HanXRQChr16g0509911 Helianthus annuus HOM05D000400 ORTHO05D000575 8.2e-14 80.5 164 32.3
PSO170G2567 Papaver somniferum HOM05D000400 ORTHO05D000575 8.2e-14 80.5 64 62.5
Ca_24338_v3 Cicer arietinum L. HOM05D000400 ORTHO05D000575 1.1e-13 80.1 164 31.7
PSO541G6177 Papaver somniferum HOM05D000400 ORTHO05D000575 1.4e-13 79.7 63 61.9
AUR62013231 Chenopodium quinoa HOM05D000400 ORTHO05D000575 1.8e-13 79.3 161 34.8
Migut.N01180 Erythranthe guttata HOM05D000400 ORTHO05D000575 1.8e-13 79.3 158 34.8
Lalb_Chr07g0193191 Lupinus albus HOM05D000400 ORTHO05D000575 1.8e-13 79.3 164 31.7
PSO675G7349 Papaver somniferum HOM05D000400 ORTHO05D000575 7.0e-13 77.4 60 63.3
PGR142G1457 Punica granatum HOM05D000400 ORTHO05D000575 9.1e-13 77.0 162 34.6
CDE02G4337 Ceratophyllum demersum HOM05D000400 ORTHO05D000575 1.2e-12 76.6 109 37.6
HanXRQChr10g0301831 Helianthus annuus HOM05D000400 ORTHO05D000575 1.2e-12 76.6 148 35.1
Ah.01g017890 Amaranthus hybridus HOM05D000400 ORTHO05D000575 1.6e-12 76.3 63 60.3
PSO541G4786 Papaver somniferum HOM05D000400 ORTHO05D000575 2.0e-12 75.9 62 59.7
EL10Ac9g21758 Beta vulgaris HOM05D000400 ORTHO05D000575 2.6e-12 75.5 60 63.3
Manes.07G075100 Manihot esculenta HOM05D000400 ORTHO05D000575 2.6e-12 75.5 45 75.6
Manes.07G076601 Manihot esculenta HOM05D000400 ORTHO05D000575 2.6e-12 75.5 45 75.6
Psat4g228320 Pisum sativum HOM05D000400 ORTHO05D000575 2.6e-12 75.5 164 31.7
unitig_0.g94 Utricularia gibba HOM05D000400 ORTHO05D000575 2.6e-12 75.5 46 73.9
MD02G1104100 Malus domestica HOM05D000400 ORTHO05D000575 5.9e-12 74.3 46 76.1
Lj1g0002627 Lotus japonicus HOM05D000400 ORTHO05D000575 1.0e-11 73.6 163 30.1
Lj1g0026598 Lotus japonicus HOM05D000400 ORTHO05D000575 1.0e-11 73.6 163 30.1
Sabra16G0191000 Salix brachista HOM05D000400 ORTHO05D000575 1.0e-11 73.6 112 39.3
Aqoxy6G01264 Aquilegia oxysepala HOM05D000400 ORTHO05D000575 1.3e-11 73.2 51 68.6
unitig_61.g26011 Utricularia gibba HOM05D000400 ORTHO05D000575 1.7e-11 72.8 60 58.3
Lsat_1_v5_gn_5_113581 Lactuca sativa HOM05D000400 ORTHO05D000575 2.2e-11 72.4 59 61.0
PGR142G2452 Punica granatum HOM05D000400 ORTHO05D000575 3.8e-11 71.6 45 73.3
Manes.07G076901 Manihot esculenta HOM05D000400 ORTHO05D000575 5.0e-11 71.2 45 71.1
EL10Ac9g21592 Beta vulgaris HOM05D000400 ORTHO05D000575 6.5e-11 70.9 54 55.6
EL10Ac9g21759 Beta vulgaris HOM05D000400 ORTHO05D000575 6.5e-11 70.9 60 60.0
Ah.01g010620 Amaranthus hybridus HOM05D000400 ORTHO05D000575 1.1e-10 70.1 60 58.3
EL10Ac8g18251 Beta vulgaris HOM05D000400 ORTHO05D000575 1.1e-10 70.1 45 66.7
AUR62013233 Chenopodium quinoa HOM05D000400 ORTHO05D000575 1.1e-10 70.1 49 63.3
EL10Ac9g21593 Beta vulgaris HOM05D000400 ORTHO05D000575 1.5e-10 69.7 60 58.3
MD05G1084700 Malus domestica HOM05D000400 ORTHO05D000575 2.5e-10 68.9 45 71.1
EL10Ac9g22325 Beta vulgaris HOM05D000400 ORTHO05D000575 5.5e-10 67.8 46 65.2
CDE02G0734 Ceratophyllum demersum HOM05D000400 ORTHO05D000575 7.2e-10 67.4 47 59.6
Hund00117 Selenicereus undatus HOM05D000400 ORTHO05D000575 7.2e-10 67.4 42 66.7
Lj9A355T79 Lonicera japonica HOM05D000400 ORTHO05D000575 9.4e-10 67.0 163 34.4
Ah.01g017880 Amaranthus hybridus HOM05D000400 ORTHO05D000575 1.2e-09 66.6 52 61.5
Ah.01g010590 Amaranthus hybridus HOM05D000400 ORTHO05D000575 2.7e-09 65.5 50 56.0
CDE02G0551 Ceratophyllum demersum HOM05D000400 ORTHO05D000575 2.7e-09 65.5 43 62.8
AUR62010251 Chenopodium quinoa HOM05D000400 ORTHO05D000575 2.7e-09 65.5 46 60.9
PSO541G4097 Papaver somniferum HOM05D000400 ORTHO05D000575 2.7e-09 65.5 40 72.5
AUR62013232 Chenopodium quinoa HOM05D000400 ORTHO05D000575 4.7e-09 64.7 46 60.9
CDE02G4179 Ceratophyllum demersum HOM05D000400 ORTHO05D000575 1.8e-08 62.8 52 55.8
Actinidia00427 Actinidia chinensis HOM05D000400 ORTHO05D000575 4.0e-08 61.6 36 75.0
Actinidia12867 Actinidia chinensis HOM05D000400 ORTHO05D000575 4.0e-08 61.6 36 75.0
AUR62010249 Chenopodium quinoa HOM05D000400 ORTHO05D000575 2.0e-07 59.3 53 47.2
EL10Ac9g21757 Beta vulgaris HOM05D000400 ORTHO05D000575 1.7e-06 56.2 45 51.1
Nitab4.5_0002740g0010 Nicotiana tabacum HOM05D000400 ORTHO05D000575 1.7e-06 56.2 34 67.6


User provided reference genes

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