Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.4e-167 592.8 294 100.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.7e-123 446.4 294 77.6
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.4e-122 442.6 294 76.5
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.1e-122 442.2 294 77.6
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.6e-121 439.9 291 77.7
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.6e-121 439.9 291 77.7
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.7e-121 437.6 294 76.5
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 2.9e-120 435.6 291 75.6
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 7.2e-119 431.0 295 75.6
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 1.2e-118 430.3 299 73.6
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.6e-118 429.9 294 74.5
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.6e-118 429.9 295 74.2
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 2.7e-118 429.1 294 75.2
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.7e-118 429.1 290 74.5
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.6e-118 428.7 295 75.3
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 8.0e-118 427.6 321 70.7
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.8e-117 426.4 295 73.6
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 2.3e-117 426.0 296 73.3
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 4.0e-117 425.2 295 73.9
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 4.0e-117 425.2 295 73.9
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 4.0e-117 425.2 294 73.1
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 6.8e-117 424.5 295 74.6
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 6.8e-117 424.5 294 74.1
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 8.8e-117 424.1 294 73.8
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.5e-116 423.3 294 73.8
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.0e-116 422.9 290 73.8
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.4e-116 422.2 308 71.1
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 3.4e-116 422.2 293 73.4
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 3.4e-116 422.2 294 73.1
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 3.4e-116 422.2 296 73.6
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 4.4e-116 421.8 296 73.3
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 5.7e-116 421.4 293 73.0
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 9.8e-116 420.6 296 73.3
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 9.8e-116 420.6 294 73.5
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.7e-115 419.9 294 73.5
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 2.2e-115 419.5 295 72.2
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 2.2e-115 419.5 295 72.2
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.7e-115 418.7 294 72.1
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.1e-114 417.2 290 72.8
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 2.7e-113 412.5 294 70.7
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 4.5e-113 411.8 296 71.3
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 5.9e-113 411.4 294 70.7
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 5.9e-113 411.4 293 71.3
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 5.9e-113 411.4 295 71.9
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 5.9e-113 411.4 294 71.8
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 5.9e-113 411.4 294 71.1
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 7.7e-113 411.0 296 71.3
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 1.0e-112 410.6 294 71.1
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 1.0e-112 410.6 294 70.4
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.0e-112 410.6 294 72.4
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.0e-112 410.6 294 71.4
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-112 410.2 294 71.1
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 1.3e-112 410.2 294 70.7
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 1.7e-112 409.8 290 71.0
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.7e-112 409.8 296 71.3
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.2e-112 409.5 294 72.1
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 5.0e-112 408.3 293 71.0
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 5.0e-112 408.3 294 70.4
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.1e-111 407.1 294 69.7
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.1e-111 407.1 294 69.7
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.1e-111 407.1 290 71.0
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 1.5e-111 406.8 294 70.4
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.5e-111 406.0 295 70.8
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 3.2e-111 405.6 296 70.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 3.2e-111 405.6 299 70.9
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 4.2e-111 405.2 299 70.2
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 5.5e-111 404.8 290 71.0
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 5.5e-111 404.8 294 70.1
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 7.2e-111 404.4 294 68.4
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 2.1e-110 402.9 294 68.4
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 4.7e-110 401.7 298 68.8
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 6.1e-110 401.4 297 69.0
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 8.0e-110 401.0 279 72.0
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 1.4e-109 400.2 294 69.0
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 8.8e-109 397.5 297 68.0
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 1.2e-108 397.1 294 70.7
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 2.2e-107 392.9 289 68.2
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 6.3e-107 391.3 296 69.6
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 8.3e-107 391.0 291 68.7
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 4.1e-106 388.7 291 68.7
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 4.1e-106 388.7 291 67.0
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 9.2e-106 387.5 296 68.6
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 9.2e-106 387.5 285 71.2
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 2.9e-104 382.5 265 71.3
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.8e-104 382.1 266 71.8
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 2.6e-100 369.4 272 69.1
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 2.6e-100 369.4 272 69.1
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 3.7e-99 365.5 290 64.8
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 5.4e-98 361.7 261 69.3
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 7.0e-98 361.3 294 65.6
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 9.2e-98 360.9 249 74.3
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 2.3e-96 356.3 295 63.7
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 5.0e-96 355.1 290 64.1
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.3e-95 352.1 294 65.0
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 1.6e-94 350.1 493 44.4
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.0e-93 347.4 294 63.6
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.4e-93 347.1 290 61.4
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 3.1e-93 345.9 323 59.4
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 2.6e-92 342.8 290 61.4
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.3e-91 340.5 290 60.0
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 4.9e-91 338.6 249 69.1
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 6.4e-91 338.2 218 78.0
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.0e-88 330.9 369 56.4
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.3e-88 329.7 298 64.1
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 5.0e-88 328.6 251 66.9
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.1e-87 327.4 206 77.2
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.5e-87 326.2 282 63.8
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.1e-85 320.9 281 62.6
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.0e-84 316.6 277 59.2
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 9.8e-84 314.3 290 55.2
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.7e-83 313.5 292 58.2
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 8.3e-83 311.2 249 64.3
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 4.1e-82 308.9 290 59.3
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 9.2e-82 307.8 210 74.8
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 1.7e-80 303.5 294 58.8
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.8e-78 296.2 319 54.2
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 3.4e-76 289.3 290 52.1
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 4.6e-73 278.9 168 82.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 4.6e-73 278.9 294 55.8
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.3e-72 277.3 250 62.4
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 1.6e-70 270.4 305 51.5
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.8e-69 266.9 168 79.8
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.9e-67 259.6 248 56.9
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 3.3e-63 246.1 265 47.5
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.6e-63 245.4 144 86.8
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 3.4e-60 236.1 182 65.9
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.4e-58 228.8 268 43.3
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 5.4e-58 228.8 224 54.9
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 6.7e-56 221.9 182 64.3
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 9.6e-55 218.0 270 44.1
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.0e-52 210.3 180 58.3
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.8e-43 179.5 119 73.9
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 9.3e-42 174.9 133 71.4
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 3.0e-40 169.9 149 59.7
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 8.7e-32 141.7 124 56.5
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.8e-30 136.7 294 37.1
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 8.2e-30 135.2 127 54.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-29 134.0 89 73.0
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 5.5e-26 122.5 214 37.9
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.3e-16 90.5 53 77.4


User provided reference genes

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