Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0147800 Rhododendron simsii HOM05D000043 ORTHO05D002888 2.7e-35 151.4 71 100.0
Rhsim11G0147600 Rhododendron simsii HOM05D000003 ORTHO05D000007 7.0e-20 100.1 55 85.5
Rhsim05G0204300 Rhododendron simsii HOM05D000043 ORTHO05D002888 9.5e-17 89.7 48 83.3
CSS0011938 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D002888 3.4e-14 81.3 46 78.3
Nitab4.5_0001477g0060 Nicotiana tabacum HOM05D000043 ORTHO05D002888 1.3e-13 79.3 46 76.1
Peaxi162Scf00016g03349 Petunia axillaris HOM05D000043 ORTHO05D002888 1.3e-13 79.3 46 76.1
PGSC0003DMG400005107 Solanum tuberosum HOM05D000043 ORTHO05D002888 1.3e-13 79.3 46 76.1
Actinidia28006 Actinidia chinensis HOM05D000043 ORTHO05D002888 1.7e-13 79.0 46 73.9
vmacro01924 Vaccinium macrocarpon HOM05D000043 ORTHO05D002888 1.7e-13 79.0 46 76.1
CAN.G504.28 Capsicum annuum HOM05D000043 ORTHO05D002888 2.2e-13 78.6 46 76.1
Nitab4.5_0012245g0030 Nicotiana tabacum HOM05D000043 ORTHO05D002888 2.9e-13 78.2 46 73.9
Solyc01g106590.4 Solanum lycopersicum HOM05D000043 ORTHO05D002888 2.9e-13 78.2 46 73.9
SGA_v2.0_scaffold342G49425 Striga asiatica HOM05D000043 ORTHO05D002888 2.9e-13 78.2 46 73.9
Cc02_g20320 Coffea canephora HOM05D000217 ORTHO05D002888 3.7e-13 77.8 46 71.7
Prupe.8G155600 Prunus persica HOM05D000043 ORTHO05D002888 3.7e-13 77.8 46 73.9
RcHm_v2.0_Chr6g0247271 Rosa chinensis HOM05D000043 ORTHO05D002888 4.9e-13 77.4 56 62.5
Sabra09G0064000 Salix brachista HOM05D000043 ORTHO05D002888 4.9e-13 77.4 46 76.1
Sopen01g048940 Solanum pennellii HOM05D000043 ORTHO05D002888 4.9e-13 77.4 46 73.9
TWI59G1125 Tripterygium wilfordii HOM05D000043 ORTHO05D002888 8.3e-13 76.6 46 73.9
Nn3g21380 Nelumbo nucifera HOM05D000043 ORTHO05D002888 1.1e-12 76.3 47 70.2
Potri.009G082500 Populus trichocarpa HOM05D000043 ORTHO05D002888 1.1e-12 76.3 46 73.9
CANSAT35G1147 Cannabis sativa HOM05D000043 ORTHO05D002888 1.4e-12 75.9 46 71.7
MD10G1114100 Malus domestica HOM05D000337 ORTHO05D002888 1.4e-12 75.9 46 71.7
RcHm_v2.0_Chr6g0247241 Rosa chinensis HOM05D000043 ORTHO05D002888 1.4e-12 75.9 56 60.7
Cfa004749 Carpinus fangiana HOM05D000043 ORTHO05D002888 1.9e-12 75.5 46 71.7
Atru.chr5.2193 Acer truncatum HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
Haze_10345 Corylus avellana HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 69.6
FvH4_2g02780 Fragaria vesca HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
FAN15G0500 Fragaria x ananassa HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
FAN20G1649 Fragaria x ananassa HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
FAN24G1857 Fragaria x ananassa HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
FAN27G1760 Fragaria x ananassa HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 71.7
QL11p027847 Quercus lobata HOM05D000043 ORTHO05D002888 2.4e-12 75.1 46 69.6
arahy.Tifrunner.gnm1.ann1.ADXI1E Arachis hypogaea HOM05D000043 ORTHO05D002888 3.2e-12 74.7 46 71.7
arahy.Tifrunner.gnm1.ann1.BHC7EV Arachis hypogaea HOM05D000043 ORTHO05D002888 3.2e-12 74.7 46 71.7
Dinv16058 Davidia involucrata HOM05D000043 ORTHO05D002888 5.4e-12 73.9 46 71.7
GSVIVG01036995001 Vitis vinifera HOM05D000043 ORTHO05D002888 5.4e-12 73.9 48 66.7
Gohir.D04G173000 Gossypium hirsutum HOM05D000043 ORTHO05D002888 7.1e-12 73.6 46 69.6
Gorai.N026200 Gossypium raimondii HOM05D000043 ORTHO05D002888 7.1e-12 73.6 46 69.6
HanXRQChr03g0069161 Helianthus annuus HOM05D000043 ORTHO05D002888 7.1e-12 73.6 46 69.6
Manes.10G089600 Manihot esculenta HOM05D000043 ORTHO05D002888 7.1e-12 73.6 45 75.6
Rhsim05G0093900 Rhododendron simsii HOM05D000043 ORTHO05D002888 7.1e-12 73.6 46 67.4
Thecc.02G033600 Theobroma cacao HOM05D000043 ORTHO05D002888 7.1e-12 73.6 46 71.7
Ca_20756_v3 Cicer arietinum L. HOM05D000043 ORTHO05D002888 9.2e-12 73.2 46 67.4
Migut.B00493 Erythranthe guttata HOM05D000043 ORTHO05D002888 9.2e-12 73.2 46 65.2
Lj5C223T7 Lonicera japonica HOM05D000043 ORTHO05D002888 9.2e-12 73.2 46 69.6
Oeu005729.1 Olea europaea HOM05D000043 ORTHO05D002888 9.2e-12 73.2 46 69.6
PGR042G0588 Punica granatum HOM05D000043 ORTHO05D002888 1.2e-11 72.8 46 67.4
CiPaw.05G023400 Carya illinoinensis HOM05D000043 ORTHO05D002888 1.6e-11 72.4 46 67.4
MD05G1110600 Malus domestica HOM05D000043 ORTHO05D002888 1.6e-11 72.4 49 65.3
PSO541G0633 Papaver somniferum HOM05D000337 ORTHO05D002888 1.6e-11 72.4 46 67.4
PSO675G0701 Papaver somniferum HOM05D000043 ORTHO05D002888 1.6e-11 72.4 46 67.4
Carub.0003s2852 Capsella rubella HOM05D000043 ORTHO05D002888 2.7e-11 71.6 46 65.2
Duzib052G0327 Durio zibethinus HOM05D000043 ORTHO05D002888 2.7e-11 71.6 46 69.6
ECA240G0408 Erigeron canadensis HOM05D000043 ORTHO05D002888 2.7e-11 71.6 46 69.6
GSVIVG01036992001 Vitis vinifera HOM05D000043 ORTHO05D002888 2.7e-11 71.6 45 68.9
CiPaw.10G135100 Carya illinoinensis HOM05D000043 ORTHO05D002888 3.5e-11 71.2 46 65.2
CDE07G1437 Ceratophyllum demersum HOM05D000043 ORTHO05D002888 3.5e-11 71.2 46 67.4
Gohir.D01G170700 Gossypium hirsutum HOM05D000043 ORTHO05D002888 3.5e-11 71.2 45 71.1
MBI16_g09814_MAGBIO Magnolia biondii HOM05D000043 ORTHO05D002888 3.5e-11 71.2 45 68.9
TAR376G1134 Trochodendron aralioides HOM05D000043 ORTHO05D002888 3.5e-11 71.2 46 67.4
Gohir.A04G128600 Gossypium hirsutum HOM05D000043 ORTHO05D002888 4.6e-11 70.9 46 67.4
Ciclev10028513m.g Citrus clementina HOM05D000337 ORTHO05D002888 6.0e-11 70.5 46 65.2
COL.COLO4_17819 Corchorus olitorius HOM05D000043 ORTHO05D002888 6.0e-11 70.5 46 67.4
THA.LOC104807197 Tarenaya hassleriana HOM05D000043 ORTHO05D002888 6.0e-11 70.5 46 65.2
TWI23G0177 Tripterygium wilfordii HOM05D000043 ORTHO05D002888 6.0e-11 70.5 46 69.6
TAR628G0254 Trochodendron aralioides HOM05D000043 ORTHO05D002888 6.0e-11 70.5 46 67.4
Psat1g064240 Pisum sativum HOM05D000043 ORTHO05D002888 7.8e-11 70.1 46 63.0
Zm00001eb105390 Zea mays HOM05D000043 ORTHO05D002888 7.8e-11 70.1 46 65.2
COL.COLO4_17816 Corchorus olitorius HOM05D000043 ORTHO05D002888 1.0e-10 69.7 46 65.2
Duzib132G0173 Durio zibethinus HOM05D000043 ORTHO05D002888 1.0e-10 69.7 46 67.4
Os07g0498900 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D002888 1.0e-10 69.7 56 55.4
Sp3g27730 Schrenkiella parvula HOM05D000043 ORTHO05D002888 1.0e-10 69.7 46 65.2
Gohir.A01G179900 Gossypium hirsutum HOM05D000043 ORTHO05D002888 1.3e-10 69.3 45 68.9
Gohir.D13G167222 Gossypium hirsutum HOM05D000043 ORTHO05D002888 1.3e-10 69.3 45 68.9
Hund04815 Selenicereus undatus HOM05D000337 ORTHO05D002888 1.3e-10 69.3 46 60.9
AL3G46080 Arabidopsis lyrata HOM05D000043 ORTHO05D002888 1.7e-10 68.9 46 65.2
MSTRG.16659 Avicennia marina HOM05D000043 ORTHO05D002888 1.7e-10 68.9 46 65.2
BcaB08g34555 Brassica carinata HOM05D000043 ORTHO05D002888 1.7e-10 68.9 46 63.0
Sed0023342 Sechium edule HOM05D000043 ORTHO05D002888 1.7e-10 68.9 47 63.8
AT2G14530 Arabidopsis thaliana HOM05D000043 ORTHO05D002888 2.3e-10 68.6 46 65.2
Lsat_1_v5_gn_9_112620 Lactuca sativa HOM05D000043 ORTHO05D002888 2.3e-10 68.6 46 65.2
Medtr6g016240 Medicago truncatula HOM05D000043 ORTHO05D002888 2.3e-10 68.6 46 65.2
EL10Ac3g05374 Beta vulgaris HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 58.7
BraA03t13655Z Brassica rapa HOM05D000043 ORTHO05D002888 3.0e-10 68.2 45 62.2
CARHR105220 Cardamine hirsuta HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 65.2
Cpa.g.sc20.76 Carica papaya HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 65.2
AUR62031457 Chenopodium quinoa HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 58.7
Eucgr.G01129 Eucalyptus grandis HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 67.4
Sc13g0006820 Simmondsia chinensis HOM05D000043 ORTHO05D002888 3.0e-10 68.2 46 63.0
A03p45200 Brassica napus HOM05D000043 ORTHO05D002888 3.9e-10 67.8 45 60.0
Sed0019918 Sechium edule HOM05D000043 ORTHO05D002888 3.9e-10 67.8 47 61.7
Aa31LG8G12750 Aethionema arabicum HOM05D000337 ORTHO05D002888 5.1e-10 67.4 46 63.0
Lalb_Chr09g0327081 Lupinus albus HOM05D000043 ORTHO05D002888 6.6e-10 67.0 46 60.9
CsaV3_4G014560 Cucumis sativus L. HOM05D000043 ORTHO05D002888 8.6e-10 66.6 45 60.0
Oeu008564.1 Olea europaea HOM05D000043 ORTHO05D002888 1.1e-09 66.2 46 65.2
BcaC01g03097 Brassica carinata HOM05D000043 ORTHO05D002888 1.9e-09 65.5 46 58.7
C03p56060 Brassica napus HOM05D000043 ORTHO05D002888 1.9e-09 65.5 46 58.7
AUR62021074 Chenopodium quinoa HOM05D000043 ORTHO05D002888 1.9e-09 65.5 46 56.5
Aqoxy1G00356 Aquilegia oxysepala HOM05D000043 ORTHO05D002888 2.5e-09 65.1 46 65.2
MELO3C018035.2 Cucumis melo HOM05D000043 ORTHO05D002888 2.5e-09 65.1 45 60.0
SEGI_02627 Sequoiadendron giganteum HOM05D000043 ORTHO05D002888 2.5e-09 65.1 58 51.7
VMungo0251G1759 Vigna mungo HOM05D000043 ORTHO05D002888 2.5e-09 65.1 45 57.8
Thhalv10022706m.g Eutrema salsugineum HOM05D000043 ORTHO05D002888 3.3e-09 64.7 46 60.9
Gohir.D04G173164 Gossypium hirsutum HOM05D000043 ORTHO05D002888 3.3e-09 64.7 48 64.6
Gohir.D04G173200 Gossypium hirsutum HOM05D000043 ORTHO05D002888 3.3e-09 64.7 48 64.6
Gorai.012G163100 Gossypium raimondii HOM05D000043 ORTHO05D002888 3.3e-09 64.7 48 64.6
unitig_21.g20712 Utricularia gibba HOM05D000043 ORTHO05D002888 4.3e-09 64.3 46 58.7
HPP92_014196 Vanilla planifolia HOM05D000337 ORTHO05D002888 4.3e-09 64.3 47 57.4
SalBow6G2370 Salvia bowleyana HOM05D000043 ORTHO05D002888 5.6e-09 63.9 46 60.9
SalBow6G4080 Salvia bowleyana HOM05D000043 ORTHO05D002888 5.6e-09 63.9 46 60.9
Lj4g0004627 Lotus japonicus HOM05D000043 ORTHO05D002888 7.3e-09 63.5 46 60.9
Phvul.002G217300 Phaseolus vulgaris HOM05D000043 ORTHO05D002888 7.3e-09 63.5 45 55.6
DCAR_021929 Daucus carota HOM05D000217 ORTHO05D002888 2.8e-08 61.6 45 57.8
Glyma.07G185900 Glycine max HOM05D000337 ORTHO05D002888 6.2e-08 60.5 45 55.6
ATR0706G274 Amborella trichopoda HOM05D000337 ORTHO05D002888 6.8e-07 57.0 45 53.3
SMO361G0283 Selaginella moellendorffii HOM05D000043 ORTHO05D002888 8.9e-07 56.6 55 41.8
SMO361G0642 Selaginella moellendorffii HOM05D000043 ORTHO05D002888 8.9e-07 56.6 55 41.8
ClCG10G009880 Citrullus lanatus HOM05D000043 ORTHO05D002888 1.2e-06 56.2 43 58.1
Rhsim05G0204100 Rhododendron simsii HOM05D000369 ORTHO05D000253 9.9e-06 53.1 29 79.3


User provided reference genes

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