Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.2e-139 500.0 282 100.0
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 3.8e-101 372.1 257 79.4
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.6e-83 312.4 255 69.8
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.4e-81 305.8 256 68.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.2e-76 288.9 237 69.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 5.4e-71 271.9 244 63.5
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.9e-68 263.5 260 61.5
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.5e-68 263.1 237 63.3
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 7.5e-65 251.5 236 61.0
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-63 246.5 261 60.2
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 4.6e-62 242.3 254 55.5
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 6.0e-62 241.9 250 56.8
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 6.6e-61 238.4 234 59.4
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.9e-60 236.9 259 58.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.9e-60 236.9 259 54.1
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.3e-60 236.1 241 60.2
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.3e-60 235.7 247 55.5
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 5.6e-60 235.3 253 56.5
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.6e-59 233.8 282 58.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.7e-59 232.3 254 56.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 6.2e-59 231.9 251 56.2
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 8.1e-59 231.5 245 58.4
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.1e-58 231.1 257 56.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.3e-58 229.9 254 57.1
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.2e-58 228.8 250 56.8
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 5.2e-58 228.8 260 58.1
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 6.8e-58 228.4 245 57.6
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 6.8e-58 228.4 247 55.9
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 6.8e-58 228.4 253 56.5
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 2.6e-57 226.5 257 55.3
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 5.8e-57 225.3 259 54.1
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 9.8e-57 224.6 250 56.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 3.7e-56 222.6 242 58.3
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.9e-56 222.2 255 55.3
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 4.9e-56 222.2 254 52.8
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 6.4e-56 221.9 245 54.7
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 8.3e-56 221.5 251 54.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 8.3e-56 221.5 256 55.5
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.9e-55 220.3 286 58.0
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.9e-55 220.3 254 52.4
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.2e-55 219.5 234 58.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 7.1e-55 218.4 263 52.1
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 9.2e-55 218.0 253 53.4
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.7e-54 216.5 254 51.6
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-53 214.2 236 56.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.7e-53 213.8 248 54.0
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.7e-53 213.8 259 54.4
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.3e-53 213.4 258 51.6
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.9e-53 212.6 254 53.5
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.9e-53 212.6 232 56.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.5e-52 210.7 275 48.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.5e-52 210.7 383 46.7
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.5e-52 209.9 259 52.5
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 5.6e-52 208.8 254 53.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 7.3e-52 208.4 236 55.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 7.3e-52 208.4 264 51.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.4e-50 204.1 262 53.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.8e-50 201.8 285 57.5
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 6.8e-50 201.8 256 52.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 1.2e-49 201.1 304 44.4
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.0e-49 200.3 252 50.0
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 5.8e-49 198.7 172 65.7
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 9.9e-49 198.0 278 47.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.7e-48 197.2 273 48.7
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.9e-48 196.4 243 51.4
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 6.4e-48 195.3 259 52.1
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.1e-47 194.5 244 51.6
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-47 194.1 267 48.3
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 3.2e-47 193.0 232 50.9
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 4.1e-47 192.6 226 54.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 9.2e-47 191.4 254 48.4
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 2.1e-46 190.3 290 45.9
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 2.7e-46 189.9 253 52.6
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.3e-45 187.6 290 45.5
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.0e-45 186.4 261 48.7
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 6.6e-45 185.3 291 45.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.1e-44 184.5 292 45.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.1e-44 184.5 303 42.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.3e-44 182.6 253 47.8
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.3e-44 181.8 258 49.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 9.6e-44 181.4 225 51.1
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.1e-43 180.3 294 44.2
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 4.7e-43 179.1 231 48.1
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.8e-42 177.2 241 47.3
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 3.1e-42 176.4 282 45.4
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 4.0e-42 176.0 207 52.2
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 4.4e-41 172.6 172 59.9
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 5.8e-41 172.2 238 48.7
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.3e-40 171.0 217 51.6
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 8.4e-40 168.3 297 41.1
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 8.4e-40 168.3 257 45.5
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.4e-39 167.5 259 44.4
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.5e-38 162.9 236 47.5
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-37 161.0 271 43.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.7e-37 160.6 256 44.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 3.9e-37 159.5 172 52.9
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.6e-37 158.7 238 47.1
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-36 157.9 254 42.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.5e-36 157.5 226 48.7
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 9.6e-36 154.8 251 45.4
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 2.8e-35 153.3 243 42.0
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-34 150.6 251 45.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.8e-34 150.6 251 45.8
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-34 150.2 249 45.0
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 2.4e-34 150.2 279 39.8
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.4e-34 150.2 265 43.8
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 3.1e-34 149.8 229 47.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.5e-33 147.5 294 39.1
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-33 147.5 258 41.9
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.5e-33 147.5 258 41.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 2.6e-33 146.7 268 41.8
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.6e-33 146.7 235 43.8
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 9.9e-33 144.8 182 50.5
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.3e-32 144.4 177 48.6
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 4.9e-32 142.5 230 43.0
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-31 140.2 250 41.2
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.5e-30 136.3 216 39.8
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 6.0e-30 135.6 168 50.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.7e-29 134.0 300 38.0
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 6.6e-29 132.1 246 41.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-28 131.0 255 40.4
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.5e-28 130.2 148 54.1
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 4.3e-28 129.4 171 47.4
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.6e-27 127.5 173 47.4
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.4e-26 123.6 282 38.7
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.4e-26 123.6 282 38.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.1e-26 123.2 219 42.9
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 6.9e-26 122.1 174 46.6
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.9e-25 118.2 139 55.4
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.3e-24 117.9 259 37.5
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.3e-24 117.9 227 37.4
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.9e-24 116.7 258 38.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.8e-24 116.3 195 43.6
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-23 114.8 233 39.5
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-23 114.8 233 39.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 6.7e-21 105.5 144 47.2
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-20 104.4 240 38.8
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-19 100.5 224 39.7
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-18 97.8 109 54.1
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.4e-18 97.8 176 42.0
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 5.3e-18 95.9 136 47.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 6.9e-18 95.5 224 37.5
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 6.9e-18 95.5 209 40.7
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 9.0e-18 95.1 176 40.3
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.6e-17 93.6 96 55.2
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-16 91.7 56 80.4
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-16 91.7 56 80.4
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-16 91.7 56 80.4
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-16 91.7 56 80.4
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-16 91.7 56 80.4
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.0e-16 91.7 57 78.9
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.2e-16 90.5 224 37.5
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.9e-16 90.1 56 78.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.9e-16 89.4 56 76.8
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 8.4e-16 88.6 56 76.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.1e-14 84.0 64 65.6
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 4.6e-14 82.8 185 37.3
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.0e-13 81.6 103 49.5
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.3e-13 81.3 220 36.4
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.1e-13 79.3 51 74.5
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.5e-12 77.8 220 35.9
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-11 74.7 60 66.7
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.3e-11 74.7 60 66.7
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.3e-11 74.7 51 72.5
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-10 70.5 106 46.2
Dinv09506 Davidia involucrata HOM05D003513 ORTHO05D004660 3.1e-10 70.1 71 54.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.4e-09 66.6 77 55.8
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 8.4e-08 62.0 145 39.3
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 1.9e-07 60.8 37 78.4
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.5e-07 60.5 74 51.4
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 2.7e-06 57.0 51 56.9


User provided reference genes

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