Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 2.0e-86 322.4 159 100.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.2e-51 206.8 176 65.3
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 8.1e-40 167.5 166 60.8
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.7e-37 158.7 166 59.0
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.0e-34 150.6 166 56.6
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.6e-32 143.3 176 52.8
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.3e-26 123.6 169 49.1
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.1e-24 114.4 153 45.1
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.1e-23 114.0 152 48.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.4e-23 112.8 164 44.5
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.4e-23 112.8 144 49.3
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.1e-23 112.5 142 48.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.2e-23 111.7 168 46.4
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 5.2e-23 111.7 148 50.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.2e-22 110.5 138 50.7
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.2e-21 106.3 144 48.6
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 2.2e-21 106.3 130 50.8
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 3.8e-21 105.5 147 46.9
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.8e-21 105.5 162 43.2
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.9e-20 103.2 142 45.1
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 1.9e-20 103.2 154 42.9
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.9e-20 103.2 134 48.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.4e-20 102.8 160 45.6
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.4e-20 102.8 160 45.6
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.4e-20 102.8 149 47.7
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.4e-20 102.8 171 42.7
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 5.4e-20 101.7 141 46.8
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.1e-19 99.8 164 43.9
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.1e-19 99.8 164 45.1
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.7e-19 99.4 162 42.0
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.0e-19 98.2 136 47.1
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.0e-18 97.4 163 40.5
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.0e-18 97.4 146 45.2
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.0e-18 97.4 170 42.9
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-18 97.1 177 41.8
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 3.9e-18 95.5 162 35.2
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 5.1e-18 95.1 140 44.3
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 6.6e-18 94.7 135 45.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 6.6e-18 94.7 149 44.3
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 8.7e-18 94.4 145 44.8
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.1e-17 94.0 162 35.2
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-17 93.6 151 40.4
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.9e-17 93.2 150 44.7
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.9e-17 93.2 162 34.6
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.5e-17 92.8 127 43.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.5e-17 92.8 158 39.2
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 3.3e-17 92.4 138 47.8
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.3e-17 92.4 211 35.5
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.3e-17 92.4 170 42.4
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.3e-17 92.0 131 47.3
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 5.6e-17 91.7 148 41.2
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 5.6e-17 91.7 135 44.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 7.3e-17 91.3 155 43.2
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 7.3e-17 91.3 146 41.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.8e-16 89.4 117 47.9
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.8e-16 89.4 158 39.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 6.2e-16 88.2 149 39.6
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 6.2e-16 88.2 122 42.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 8.1e-16 87.8 153 41.8
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.4e-15 87.0 164 40.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.8e-15 86.7 143 43.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 5.3e-15 85.1 135 43.0
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.3e-15 85.1 156 40.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 5.3e-15 85.1 152 38.8
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.2e-14 84.0 134 44.0
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.2e-14 84.0 134 43.3
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.0e-14 83.2 143 42.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.6e-14 82.8 136 41.9
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.6e-14 82.8 134 43.3
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.6e-14 82.8 123 39.8
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.6e-14 82.8 133 44.4
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 3.4e-14 82.4 146 41.1
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.4e-14 82.4 145 38.6
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 4.4e-14 82.0 151 39.7
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 5.8e-14 81.6 131 43.5
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 9.9e-14 80.9 109 48.6
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 9.9e-14 80.9 146 41.1
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 9.9e-14 80.9 109 48.6
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 9.9e-14 80.9 130 43.1
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.9e-14 80.9 150 40.0
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.3e-13 80.5 129 44.2
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.7e-13 80.1 142 37.3
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.7e-13 80.1 150 40.0
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.2e-13 79.7 109 47.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.2e-13 79.7 140 42.1
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.9e-13 79.3 150 40.0
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.9e-13 79.3 139 41.0
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.8e-13 79.0 132 43.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 3.8e-13 79.0 132 43.9
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 3.8e-13 79.0 132 43.9
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 3.8e-13 79.0 132 43.9
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.8e-13 79.0 151 41.7
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.9e-13 78.6 117 46.2
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 8.4e-13 77.8 145 41.4
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.1e-12 77.4 111 45.0
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-12 76.6 124 42.7
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.9e-12 76.6 119 42.9
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 3.2e-12 75.9 113 43.4
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 3.2e-12 75.9 143 39.9
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 4.2e-12 75.5 121 41.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 4.2e-12 75.5 152 38.2
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 4.2e-12 75.5 113 41.6
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.2e-12 75.5 122 40.2
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 4.2e-12 75.5 137 38.0
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.4e-12 75.1 148 35.8
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.5e-11 72.4 143 37.1
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.0e-10 70.9 152 38.2
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.7e-10 70.1 122 37.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.9e-09 66.6 140 38.6
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 4.3e-09 65.5 139 38.8
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 5.6e-09 65.1 57 59.6
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 5.6e-09 65.1 57 59.6
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 3.6e-08 62.4 161 35.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-07 60.5 62 58.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 4.0e-07 58.9 35 74.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 5.3e-07 58.5 33 72.7
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.3e-07 58.5 57 54.4
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 9.0e-07 57.8 52 57.7
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 5.8e-06 55.1 82 47.6


User provided reference genes

Program Settings