Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.3e-106 389.0 211 100.0
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.3e-98 362.5 229 89.5
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.9e-74 282.0 206 75.7
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.6e-73 278.1 211 73.5
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.6e-72 275.4 211 73.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.7e-69 266.5 209 70.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 3.8e-69 265.4 207 71.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 4.9e-69 265.0 201 71.6
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.9e-68 263.1 176 81.8
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.9e-68 263.1 208 70.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.2e-68 262.3 199 71.9
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 6.0e-67 258.1 205 70.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.7e-66 256.5 221 67.0
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.7e-66 256.5 207 68.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.3e-66 256.1 207 68.6
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.0e-66 255.8 207 68.1
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.9e-65 253.1 200 68.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 7.3e-65 251.1 203 68.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.3e-64 250.4 210 65.2
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.8e-64 248.4 178 73.6
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.2e-64 248.1 207 65.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.1e-63 247.3 183 74.3
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.8e-63 246.5 207 65.2
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.4e-63 246.1 207 66.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.4e-63 246.1 192 66.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.0e-63 245.4 191 69.6
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.3e-63 245.0 181 70.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.0e-63 244.2 212 65.1
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.5e-62 243.4 207 64.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.6e-62 242.7 218 62.8
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 2.6e-62 242.7 199 68.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.4e-62 242.3 183 70.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.3e-61 240.4 233 60.1
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.7e-61 240.0 212 63.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.2e-61 239.6 179 72.6
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.9e-61 239.2 196 65.3
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.9e-61 239.2 203 66.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.8e-61 238.8 199 65.3
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.9e-61 238.4 187 67.9
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.4e-60 236.9 214 63.1
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.4e-60 236.1 181 67.4
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 3.2e-60 235.7 186 68.8
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 4.2e-60 235.3 198 64.6
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 4.2e-60 235.3 205 63.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 7.1e-60 234.6 188 67.0
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.1e-60 234.6 199 64.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.1e-59 233.0 215 60.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.1e-59 233.0 205 63.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.1e-59 233.0 207 62.8
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.1e-59 233.0 209 65.1
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.1e-59 233.0 198 62.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 4.6e-59 231.9 194 64.9
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 6.0e-59 231.5 205 62.4
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 6.0e-59 231.5 205 62.4
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 6.0e-59 231.5 209 64.6
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 7.9e-59 231.1 211 64.0
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.9e-59 231.1 211 63.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.0e-58 230.7 198 63.6
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.0e-58 230.7 210 62.4
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.0e-58 230.7 207 61.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.0e-58 230.7 212 63.7
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.3e-58 230.3 204 62.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.8e-58 229.9 182 67.6
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 2.3e-58 229.6 179 67.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 3.9e-58 228.8 195 62.6
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 5.1e-58 228.4 198 63.1
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.1e-58 228.4 200 65.5
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 6.7e-58 228.0 188 64.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.1e-57 227.3 195 62.6
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.1e-57 227.3 192 63.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 1.1e-57 227.3 191 63.9
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.5e-57 226.9 207 59.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.9e-57 226.5 190 63.2
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 3.3e-57 225.7 161 72.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 4.3e-57 225.3 184 65.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 4.3e-57 225.3 184 65.8
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 5.6e-57 224.9 207 59.4
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 5.6e-57 224.9 208 59.1
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 5.6e-57 224.9 183 62.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 7.4e-57 224.6 191 63.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 9.6e-57 224.2 208 62.0
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 9.6e-57 224.2 208 62.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 9.6e-57 224.2 209 58.9
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.3e-56 223.8 215 59.1
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 2.8e-56 222.6 191 60.2
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.8e-56 222.6 200 63.5
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 3.7e-56 222.2 187 63.6
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 6.2e-56 221.5 211 60.2
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 8.1e-56 221.1 192 64.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.1e-55 220.7 201 64.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.1e-55 220.7 207 62.3
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.4e-55 220.3 207 58.5
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-55 220.3 200 60.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.4e-55 220.3 204 59.3
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.4e-55 219.5 182 63.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.1e-55 219.2 210 60.5
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 3.1e-55 219.2 181 64.1
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.0e-55 218.8 212 57.1
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.3e-55 218.4 167 69.5
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.3e-55 218.4 167 69.5
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.9e-55 218.0 202 60.4
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 9.0e-55 217.6 167 67.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.0e-54 216.5 181 65.2
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 3.4e-54 215.7 211 57.3
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 5.8e-54 214.9 186 60.8
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 7.6e-54 214.5 199 59.8
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.3e-53 213.8 182 65.4
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.8e-53 212.2 211 56.9
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 6.5e-53 211.5 179 63.7
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 5.5e-52 208.4 183 62.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 7.1e-52 208.0 200 58.0
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 6.0e-51 204.9 207 54.1
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.0e-50 204.1 191 58.6
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-50 203.8 205 58.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 2.3e-50 203.0 191 58.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.0e-50 202.6 216 58.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.1e-50 201.8 238 51.3
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.1e-49 200.7 228 52.2
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.9e-49 199.9 178 59.6
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.9e-45 186.0 184 58.2
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.0e-45 185.3 153 63.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 8.4e-45 184.5 234 51.3
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 1.1e-44 184.1 200 55.5
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.7e-42 174.5 199 51.8
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.9e-41 173.3 177 56.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.3e-40 170.6 174 53.4
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.2e-40 167.9 178 53.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.2e-38 164.1 206 50.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 8.5e-37 157.9 105 79.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.1e-35 153.3 101 80.2
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.5e-33 147.1 164 50.0
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.5e-33 146.4 97 75.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.3e-33 146.0 127 60.6
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.7e-32 142.5 174 47.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.5e-30 137.1 171 48.0
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.7e-29 133.7 174 44.8
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 8.5e-29 131.3 107 60.7
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-27 127.5 96 66.7
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.7e-27 125.6 117 59.0
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 7.9e-27 124.8 124 58.1
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.0e-26 122.9 125 56.8
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.6e-25 119.8 140 52.1
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 9.7e-25 117.9 104 60.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.8e-24 116.3 112 58.9
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.0e-22 110.2 82 70.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 5.0e-21 105.5 109 55.0
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.0e-17 93.6 68 69.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-16 90.5 79 54.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.8e-13 79.3 76 61.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.5e-12 76.6 125 35.2
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 9.4e-12 74.7 62 66.1
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 1.5e-09 67.4 72 51.4
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-09 67.0 96 41.7
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 9.8e-09 64.7 41 75.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.7e-08 63.9 46 67.4
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 4.8e-08 62.4 49 67.3
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.1e-07 59.7 49 65.3
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 2.7e-06 56.6 85 43.5


User provided reference genes

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