Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.4e-176 623.6 534 100.0
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.5e-101 373.6 534 83.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 3.7e-89 333.2 253 74.7
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 3.2e-64 250.4 271 57.6
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.0e-62 245.4 261 57.1
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.0e-62 245.4 261 57.1
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.1e-56 225.3 266 53.0
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.4e-56 223.0 265 51.3
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.1e-54 216.5 233 58.8
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.6e-53 213.0 265 52.5
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.8e-49 200.3 261 48.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 8.4e-49 199.1 264 51.1
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.4e-48 198.4 243 50.2
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.7e-47 194.1 243 50.2
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 3.0e-46 190.7 264 47.3
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 5.1e-46 189.9 264 47.0
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.5e-45 188.3 245 49.8
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 4.3e-45 186.8 263 46.8
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 4.3e-45 186.8 263 46.8
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 7.3e-45 186.0 258 46.1
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 9.6e-45 185.7 245 48.2
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.8e-44 184.1 266 48.1
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 4.8e-44 183.3 266 47.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 4.0e-43 180.3 269 48.7
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 9.0e-43 179.1 268 48.1
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 9.0e-43 179.1 264 48.5
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 9.0e-43 179.1 268 47.8
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 1.2e-42 178.7 265 46.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.0e-42 177.9 267 45.7
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.3e-41 175.3 265 46.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.3e-41 175.3 268 47.4
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 2.2e-41 174.5 263 47.5
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.9e-41 174.1 268 45.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 4.9e-41 173.3 265 46.0
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 8.4e-41 172.6 268 45.5
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.4e-40 171.8 264 45.8
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.9e-40 171.4 261 46.7
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.4e-40 171.0 266 45.1
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 2.4e-40 171.0 266 45.5
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 4.2e-40 170.2 262 46.6
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.2e-40 170.2 263 44.5
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 4.2e-40 170.2 268 46.6
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 4.2e-40 170.2 265 44.9
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 5.4e-40 169.9 266 46.2
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.4e-40 169.9 263 44.5
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 7.1e-40 169.5 266 46.2
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 9.3e-40 169.1 258 44.6
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 4.6e-39 166.8 262 46.9
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-38 165.2 264 44.3
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.8e-38 164.9 264 44.3
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.0e-38 164.1 264 42.8
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 3.9e-38 163.7 264 43.9
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 5.1e-38 163.3 266 45.1
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 8.7e-38 162.5 266 42.1
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 8.7e-38 162.5 269 42.0
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.5e-37 161.8 265 45.7
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.9e-37 161.4 263 43.7
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.5e-37 161.0 244 45.1
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 3.3e-37 160.6 263 41.4
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 4.3e-37 160.2 247 41.3
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 5.6e-37 159.8 266 43.2
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 7.4e-37 159.5 243 47.7
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 7.4e-37 159.5 244 45.5
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.3e-36 158.7 259 43.2
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.3e-36 158.7 258 43.8
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 1.6e-36 158.3 255 43.1
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.1e-36 157.9 268 43.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 4.8e-36 156.8 257 42.4
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 8.1e-36 156.0 270 45.2
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.4e-35 155.2 257 42.0
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 3.1e-35 154.1 258 46.9
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 4.0e-35 153.7 265 41.5
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.2e-34 152.1 257 42.4
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.2e-34 152.1 244 42.6
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 3.4e-34 150.6 256 43.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 4.5e-34 150.2 259 41.3
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 5.8e-34 149.8 265 39.6
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.7e-33 148.3 256 42.2
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 2.2e-33 147.9 270 41.1
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.9e-33 147.5 206 47.1
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.8e-33 147.1 259 40.5
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.8e-33 147.1 265 40.4
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 6.5e-33 146.4 243 43.6
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.1e-32 145.6 248 44.0
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.2e-32 143.7 257 42.0
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 9.3e-32 142.5 209 45.0
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.6e-31 141.7 261 41.8
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.1e-31 141.4 264 41.7
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.1e-31 141.4 247 42.5
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.0e-30 137.5 259 39.8
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 3.0e-30 137.5 263 41.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.9e-30 137.1 241 44.0
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 6.7e-30 136.3 264 43.9
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 8.7e-30 136.0 259 39.8
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 2.8e-28 131.0 251 42.2
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.7e-28 130.6 238 41.6
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.7e-28 130.6 238 41.6
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.4e-27 127.9 240 43.8
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 2.4e-27 127.9 259 41.3
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.0e-27 125.9 241 40.2
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.0e-27 125.9 241 40.2
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.6e-26 124.4 260 38.1
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 3.8e-25 120.6 257 41.6
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 6.5e-25 119.8 267 38.2
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 6.5e-25 119.8 256 39.5
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 8.4e-25 119.4 257 40.5
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.4e-24 118.6 254 39.0
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.9e-24 118.2 242 38.8
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.2e-24 117.1 255 39.6
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 5.5e-24 116.7 254 38.6
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 3.5e-23 114.0 237 39.7
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.6e-23 113.6 244 38.5
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 7.9e-23 112.8 257 35.0
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 1.0e-22 112.5 254 37.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.0e-22 112.5 245 38.8
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.3e-22 112.1 255 37.6
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.3e-20 105.5 266 35.0
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.6e-20 105.1 235 38.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 2.8e-20 104.4 198 41.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 6.3e-20 103.2 263 31.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 4.1e-19 100.5 198 40.9
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 6.9e-19 99.8 233 36.5
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 9.0e-19 99.4 233 36.5
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.5e-18 98.6 233 36.9
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.5e-18 98.6 257 33.1
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 5.9e-18 96.7 234 36.3
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 2.2e-17 94.7 241 33.2
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 5.0e-17 93.6 233 35.6
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 5.0e-17 93.6 233 35.6
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.1e-16 92.4 221 38.5
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.4e-16 92.0 234 36.8
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.9e-16 91.7 238 37.8
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.6e-15 88.6 234 34.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.6e-15 88.6 234 33.3
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.6e-15 88.6 210 36.7
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 3.6e-15 87.4 180 37.8
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.8e-14 82.8 256 33.6
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.1e-13 82.4 220 35.5
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 2.5e-13 81.3 263 32.3
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.5e-13 81.3 211 37.0
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 7.4e-13 79.7 198 35.4
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 1.7e-12 78.6 223 34.5
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 8.2e-12 76.3 216 31.0
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.4e-11 75.5 106 47.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 6.9e-11 73.2 239 30.1
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.2e-10 72.4 199 36.2
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.6e-10 71.2 60 58.3
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.6e-10 71.2 248 30.6
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.5e-10 70.5 236 33.5
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 4.5e-10 70.5 196 34.7
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 5.9e-10 70.1 244 30.3
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 5.9e-10 70.1 118 40.7
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.0e-09 69.3 125 38.4
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.3e-09 68.9 128 35.9
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.3e-09 68.9 234 32.5
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 2.9e-09 67.8 196 34.2
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 2.9e-09 67.8 196 33.2
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.9e-09 67.8 271 29.2
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 1.9e-08 65.1 60 55.0
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-08 65.1 60 55.0
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 7.2e-08 63.2 51 66.7
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 9.4e-08 62.8 108 38.9
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 3.6e-07 60.8 277 26.0
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 4.7e-07 60.5 268 27.2
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.0e-06 59.3 279 26.2
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.8e-06 58.5 199 29.6
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.8e-06 58.5 199 29.6
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.8e-06 58.5 106 39.6
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 3.9e-06 57.4 112 36.6
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.7e-06 56.6 110 39.1
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 8.8e-06 56.2 114 34.2
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 8.8e-06 56.2 133 31.6


User provided reference genes

Program Settings