Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 6.7e-142 507.3 250 100.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.7e-63 245.7 135 87.4
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.8e-61 238.4 134 85.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.8e-60 235.7 135 82.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 6.5e-60 235.0 154 79.9
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.4e-59 233.8 135 81.5
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.9e-59 233.4 135 82.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 9.3e-59 231.1 135 82.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 4.6e-58 228.8 135 82.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.6e-58 228.8 135 80.0
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 3.0e-57 226.1 135 80.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 5.1e-57 225.3 135 80.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.5e-56 223.8 135 80.0
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.5e-56 223.0 135 77.8
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.3e-56 222.6 134 79.1
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.3e-56 222.6 136 80.1
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 7.4e-56 221.5 135 78.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-55 220.7 135 77.0
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-55 220.7 135 77.0
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.6e-55 220.3 135 77.0
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.8e-55 219.5 135 78.5
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 3.7e-55 219.2 135 75.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.8e-55 218.8 135 77.8
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 8.2e-55 218.0 135 76.3
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.4e-54 217.2 135 77.0
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.3e-54 215.3 135 77.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.9e-54 214.9 135 77.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.9e-54 214.9 135 77.0
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 9.0e-54 214.5 135 77.8
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.2e-53 214.2 135 74.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.5e-53 213.8 135 75.6
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.6e-53 213.0 135 74.8
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 2.6e-53 213.0 135 74.8
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 3.4e-53 212.6 135 73.3
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 3.4e-53 212.6 135 74.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.4e-53 212.6 135 73.3
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 4.5e-53 212.2 135 73.3
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 5.9e-53 211.8 135 74.1
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.9e-53 211.8 135 74.1
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 5.9e-53 211.8 135 74.1
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.0e-52 211.1 135 73.3
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.0e-52 211.1 135 75.6
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.7e-52 210.3 135 73.3
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.7e-52 210.3 134 73.9
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.2e-52 209.9 135 73.3
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.9e-52 209.5 135 70.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.0e-52 208.8 135 71.1
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.0e-52 208.8 135 71.1
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.0e-52 208.8 135 74.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 6.5e-52 208.4 135 71.9
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.5e-52 208.4 134 72.4
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 8.5e-52 208.0 135 71.1
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.1e-51 207.6 135 71.1
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.9e-51 206.8 135 71.9
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.5e-51 206.5 135 69.6
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.2e-51 206.1 135 70.4
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 3.2e-51 206.1 135 69.6
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 3.2e-51 206.1 135 73.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.2e-51 205.7 143 69.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 7.2e-51 204.9 135 70.4
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 7.2e-51 204.9 135 68.9
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 9.3e-51 204.5 135 68.9
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 9.3e-51 204.5 135 70.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-50 203.8 135 68.1
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.1e-50 203.4 136 73.5
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.7e-50 203.0 134 70.9
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.6e-50 202.2 135 70.4
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 6.1e-50 201.8 133 68.4
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 7.9e-50 201.4 135 69.6
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.0e-49 201.1 134 69.4
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.0e-49 201.1 137 67.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.0e-49 201.1 135 68.1
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.0e-49 201.1 134 71.6
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.0e-49 201.1 135 70.4
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-49 200.7 143 67.8
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 3.0e-49 199.5 135 68.1
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.0e-49 199.5 135 71.1
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.9e-49 199.1 135 68.1
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 3.9e-49 199.1 134 71.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 6.7e-49 198.4 134 69.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-48 197.6 135 68.1
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.9e-48 196.8 134 67.9
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.9e-48 196.8 215 54.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.5e-48 196.4 135 68.9
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.3e-48 196.1 134 70.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 4.3e-48 195.7 135 68.1
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 5.7e-48 195.3 119 80.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.7e-48 195.3 135 68.1
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 5.7e-48 195.3 135 68.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 7.4e-48 194.9 153 62.1
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 9.7e-48 194.5 134 67.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.3e-47 194.1 135 66.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.2e-47 193.4 135 69.6
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 2.8e-47 193.0 156 60.9
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 6.3e-47 191.8 169 58.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.2e-47 191.4 135 67.4
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.8e-46 190.3 172 55.8
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.1e-46 189.5 130 66.9
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.9e-46 188.3 170 57.6
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.9e-46 188.3 170 57.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 9.1e-46 188.0 177 55.4
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.5e-45 187.2 135 69.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.5e-44 181.8 135 65.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.9e-43 180.3 190 51.6
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.9e-42 174.9 135 62.2
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.8e-41 173.7 111 76.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.3e-39 165.2 135 66.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.1e-38 164.5 135 56.3
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-38 164.1 92 84.8
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.5e-36 155.2 134 52.2
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 3.2e-35 152.9 128 61.7
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.0e-33 147.9 134 51.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 1.1e-32 144.4 134 49.3
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 3.3e-32 142.9 97 69.1
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 4.4e-32 142.5 134 50.0
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 4.4e-32 142.5 134 50.0
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 7.4e-32 141.7 82 84.1
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.4e-32 141.7 132 50.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.3e-31 141.0 97 75.3
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 9.1e-30 134.8 77 85.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.9e-29 132.1 134 51.5
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.3e-28 131.0 77 84.4
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.9e-27 127.1 77 83.1
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 2.1e-26 123.6 77 80.5
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 4.7e-26 122.5 82 67.1
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.8e-25 120.6 77 76.6
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.8e-25 120.6 77 76.6
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-25 120.6 94 64.9
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.0e-25 119.8 77 76.6
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 4.0e-25 119.4 86 61.6
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.6e-24 116.7 69 82.6
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.3e-24 116.3 77 72.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-22 110.9 75 72.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-21 107.8 71 73.2
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-21 107.1 83 62.7
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.9e-19 100.5 72 69.4
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-19 100.1 145 42.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 8.0e-18 95.1 65 69.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.8e-17 94.0 73 61.6
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.0e-16 90.5 67 61.2
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 6.3e-15 85.5 57 63.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.1e-14 84.7 52 71.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 4.1e-14 82.8 52 65.4
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 9.1e-14 81.6 52 63.5
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.6e-13 80.9 52 67.3
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.5e-13 79.7 51 64.7
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 7.7e-13 78.6 54 63.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.0e-12 75.9 51 58.8
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.0e-12 75.9 51 58.8
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 5.0e-12 75.9 46 80.4
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.8e-10 70.1 55 49.1
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.6e-10 69.7 63 52.4
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-09 66.2 51 52.9
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.4e-08 63.2 45 68.9
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 5.7e-08 62.4 51 49.0


User provided reference genes

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