Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.3e-136 487.6 239 100.0
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.0e-63 246.5 176 74.4
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.2e-60 235.0 177 70.6
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.3e-49 200.7 179 63.1
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.1e-48 197.6 145 71.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.4e-48 197.2 179 60.3
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.4e-48 197.2 179 61.5
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.1e-48 195.7 179 59.8
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 9.2e-48 194.5 179 60.9
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.2e-48 194.5 179 61.5
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.6e-47 193.7 179 60.3
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.0e-46 189.5 180 60.6
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 3.9e-46 189.1 179 59.8
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 5.1e-46 188.7 179 58.7
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 6.6e-46 188.3 179 58.1
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 6.6e-46 188.3 179 59.2
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.9e-45 186.8 179 58.7
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 3.3e-45 186.0 179 59.2
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 5.6e-45 185.3 179 59.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 9.6e-45 184.5 179 57.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 9.6e-45 184.5 179 58.1
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.6e-44 183.7 179 57.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.1e-44 183.3 179 59.2
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.8e-44 183.0 179 56.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.8e-44 183.0 179 57.5
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.8e-44 183.0 179 58.1
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.8e-44 183.0 179 58.1
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 4.7e-44 182.2 179 57.5
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 6.2e-44 181.8 179 58.1
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 6.2e-44 181.8 179 57.5
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.4e-43 180.6 179 58.1
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.4e-43 180.6 179 58.1
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.1e-43 179.5 179 57.5
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 6.9e-43 178.3 179 55.9
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 6.9e-43 178.3 174 56.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 6.9e-43 178.3 179 54.7
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.5e-42 177.2 179 55.9
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.0e-42 176.8 179 54.7
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.0e-42 176.8 180 57.2
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 3.4e-42 176.0 179 55.3
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.4e-42 175.6 179 57.0
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 4.4e-42 175.6 179 55.9
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.8e-42 175.3 181 56.4
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 5.8e-42 175.3 181 56.4
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.3e-41 174.1 179 54.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.7e-41 173.7 179 54.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.2e-41 173.3 179 54.7
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.2e-41 173.3 180 57.8
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.2e-41 173.3 151 64.2
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 2.2e-41 173.3 179 55.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.9e-41 172.9 183 55.2
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 3.8e-41 172.6 179 54.2
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.8e-41 172.6 171 56.7
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 4.9e-41 172.2 179 53.6
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 6.4e-41 171.8 179 54.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.1e-40 171.0 179 54.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.1e-40 171.0 179 53.6
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.1e-40 171.0 180 54.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.9e-40 170.2 172 54.7
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.9e-40 170.2 179 54.7
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.9e-40 170.2 179 53.6
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.2e-40 169.5 179 54.7
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 3.2e-40 169.5 179 54.7
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 3.2e-40 169.5 179 52.0
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 5.4e-40 168.7 179 54.2
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 5.4e-40 168.7 172 55.2
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 5.4e-40 168.7 180 55.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.1e-40 168.3 180 55.0
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.1e-40 168.3 180 55.0
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 7.1e-40 168.3 180 55.0
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 9.3e-40 167.9 176 52.3
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.2e-39 167.5 179 54.2
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.6e-39 167.2 179 54.7
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.1e-39 166.8 179 52.0
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.7e-39 166.4 180 55.6
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 2.7e-39 166.4 172 51.7
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.5e-39 166.0 179 53.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 6.0e-39 165.2 179 52.0
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 6.0e-39 165.2 179 52.0
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 6.0e-39 165.2 180 55.6
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 6.0e-39 165.2 179 52.0
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 7.8e-39 164.9 179 51.4
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 7.8e-39 164.9 179 51.4
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.8e-39 164.9 180 55.0
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.0e-38 164.5 180 53.3
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.3e-38 164.1 180 53.3
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.3e-38 163.3 179 52.5
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 3.0e-38 162.9 179 50.8
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.0e-38 162.9 180 54.4
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.0e-38 162.9 180 52.8
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.9e-38 162.5 180 53.9
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 6.6e-38 161.8 179 53.6
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 6.6e-38 161.8 179 52.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 8.7e-38 161.4 179 50.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 8.7e-38 161.4 180 53.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-37 161.0 172 52.3
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.1e-37 161.0 172 52.9
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.5e-37 160.6 179 50.3
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.9e-37 160.2 179 50.3
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 2.5e-37 159.8 179 49.7
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 4.3e-37 159.1 179 52.0
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.3e-37 158.3 179 53.6
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 7.3e-37 158.3 172 51.2
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 9.6e-37 157.9 179 50.3
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.6e-37 157.9 179 50.8
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 6.2e-36 155.2 179 49.7
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.8e-35 153.7 179 50.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.4e-35 153.3 179 51.4
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 6.9e-35 151.8 180 48.9
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 9.0e-35 151.4 179 52.0
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 9.0e-35 151.4 179 48.6
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.5e-34 150.6 181 50.8
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-34 150.2 181 50.8
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 3.4e-34 149.4 185 49.2
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 3.4e-34 149.4 172 51.7
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.5e-34 149.1 181 50.3
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 5.8e-34 148.7 181 50.3
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.8e-34 148.7 181 50.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.8e-34 148.7 181 50.3
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.8e-34 148.7 181 50.3
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 7.6e-34 148.3 181 48.6
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.9e-34 147.9 179 50.3
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 4.9e-33 145.6 181 48.1
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-32 144.4 180 47.8
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.1e-32 144.4 102 75.5
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.9e-32 143.7 180 48.9
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 3.2e-32 142.9 181 50.8
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.2e-31 141.0 103 72.8
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.9e-30 136.0 181 48.1
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 7.4e-29 131.7 160 49.4
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 1.3e-28 131.0 182 47.8
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.1e-28 130.2 184 43.5
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-26 124.4 179 45.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.2e-26 124.4 179 45.8
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 4.5e-26 122.5 179 43.0
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.3e-25 120.9 179 45.3
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 2.4e-24 116.7 179 41.9
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-24 116.3 121 52.9
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-24 116.3 121 52.9
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 9.3e-24 114.8 179 43.6
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 2.1e-23 113.6 179 40.8
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 2.1e-23 113.6 179 40.8
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 4.6e-23 112.5 190 37.4
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 4.6e-23 112.5 179 40.8
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.3e-22 110.2 102 56.9
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.9e-21 107.1 180 39.4
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.5e-21 106.7 184 39.1
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.1e-19 101.3 179 38.0
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 9.0e-19 98.2 208 37.0
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-18 97.4 98 62.2
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 9.7e-13 78.2 101 44.6
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-12 76.6 92 44.6
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.0e-10 70.5 35 85.7
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.0e-09 68.2 35 85.7
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.7e-09 67.4 79 49.4
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-08 63.9 61 55.7
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.8e-06 57.4 27 85.2
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 2.3e-06 57.0 100 38.0
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 8.8e-06 55.1 27 77.8
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 8.8e-06 55.1 181 29.3


User provided reference genes

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