Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.7e-35 151.0 76 100.0
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 3.6e-30 134.4 72 88.9
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 5.8e-28 127.1 76 81.6
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 3.2e-26 121.3 73 78.1
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 4.1e-26 120.9 68 86.8
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 5.4e-26 120.6 63 88.9
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 5.4e-26 120.6 62 90.3
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 9.2e-26 119.8 68 85.3
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.2e-25 119.4 61 91.8
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.2e-25 119.4 64 87.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.2e-25 119.4 64 87.5
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.2e-25 119.4 62 90.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 1.6e-25 119.0 68 82.4
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.6e-25 119.0 62 90.3
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 2.0e-25 118.6 72 76.4
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 2.0e-25 118.6 72 76.4
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 2.7e-25 118.2 68 83.8
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.7e-25 118.2 62 88.7
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 4.6e-25 117.5 73 75.3
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 6.0e-25 117.1 74 77.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 6.0e-25 117.1 67 83.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 7.8e-25 116.7 72 75.0
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 7.8e-25 116.7 62 87.1
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 7.8e-25 116.7 62 87.1
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 7.8e-25 116.7 62 88.7
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 7.8e-25 116.7 62 85.5
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.0e-24 116.3 75 74.7
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.0e-24 116.3 61 88.5
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.3e-24 115.9 62 83.9
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.3e-24 115.9 62 85.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 1.3e-24 115.9 62 87.1
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.7e-24 115.5 61 86.9
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.7e-24 115.5 71 74.6
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-24 115.5 67 80.6
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-24 115.5 67 80.6
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-24 115.5 67 80.6
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-24 115.5 67 80.6
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.3e-24 115.2 73 72.6
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 2.3e-24 115.2 67 80.6
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.3e-24 115.2 67 79.1
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.3e-24 115.2 67 79.1
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-24 115.2 61 88.5
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 3.0e-24 114.8 61 86.9
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.0e-24 114.8 67 80.6
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 3.0e-24 114.8 61 86.9
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 3.0e-24 114.8 62 85.5
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 3.0e-24 114.8 62 87.1
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 3.9e-24 114.4 67 80.6
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 3.9e-24 114.4 61 86.9
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 5.0e-24 114.0 67 80.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 6.6e-24 113.6 61 85.2
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 6.6e-24 113.6 71 73.2
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 6.6e-24 113.6 61 85.2
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 6.6e-24 113.6 61 85.2
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 6.6e-24 113.6 67 79.1
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 6.6e-24 113.6 67 79.1
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 6.6e-24 113.6 61 85.2
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 8.6e-24 113.2 61 85.2
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 8.6e-24 113.2 61 85.2
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 8.6e-24 113.2 61 85.2
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-23 112.8 67 80.6
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.1e-23 112.8 67 80.6
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.1e-23 112.8 62 85.5
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.5e-23 112.5 69 78.3
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 1.5e-23 112.5 67 76.1
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.5e-23 111.7 63 82.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.5e-23 111.7 64 81.2
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.5e-23 111.7 64 81.2
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 2.5e-23 111.7 67 79.1
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.5e-23 111.7 61 82.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 3.3e-23 111.3 60 85.0
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 3.3e-23 111.3 68 75.0
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 4.3e-23 110.9 62 79.0
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 4.3e-23 110.9 60 85.0
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 4.3e-23 110.9 61 83.6
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 4.3e-23 110.9 61 83.6
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 5.6e-23 110.5 62 83.9
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 9.5e-23 109.8 63 76.2
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 9.5e-23 109.8 62 77.4
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 9.5e-23 109.8 62 77.4
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 9.5e-23 109.8 62 80.6
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 9.5e-23 109.8 66 75.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.6e-22 109.0 63 74.6
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.6e-22 109.0 62 77.4
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.6e-22 109.0 61 82.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 1.6e-22 109.0 69 73.9
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.6e-22 109.0 69 73.9
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 2.8e-22 108.2 63 82.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 3.6e-22 107.8 62 82.3
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 3.6e-22 107.8 60 81.7
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 6.2e-22 107.1 62 75.8
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 8.1e-22 106.7 67 73.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 8.1e-22 106.7 67 74.6
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 1.1e-21 106.3 61 78.7
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.1e-21 106.3 73 69.9
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 1.4e-21 105.9 62 74.2
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.8e-21 105.5 62 74.2
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.8e-21 105.5 62 74.2
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.8e-21 105.5 62 74.2
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 2.3e-21 105.1 62 74.2
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 2.3e-21 105.1 62 74.2
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 2.3e-21 105.1 62 74.2
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.1e-21 104.8 61 75.4
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 4.0e-21 104.4 63 81.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 4.0e-21 104.4 62 77.4
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 5.2e-21 104.0 62 77.4
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 5.2e-21 104.0 60 76.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 8.9e-21 103.2 66 69.7
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.9e-21 103.2 60 80.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 1.2e-20 102.8 66 69.7
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 2.0e-20 102.1 66 68.2
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 2.0e-20 102.1 66 68.2
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 2.0e-20 102.1 66 68.2
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 2.0e-20 102.1 66 68.2
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 5.8e-20 100.5 70 67.1
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.7e-19 99.0 83 60.2
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.9e-18 95.5 96 54.2
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 1.3e-16 89.4 53 79.2
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.6e-16 86.7 44 81.8
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 1.9e-15 85.5 60 63.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 6.2e-14 80.5 69 56.5
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.1e-13 79.7 60 68.3
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 5.2e-13 77.4 37 86.5
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 1.2e-12 76.3 36 86.1
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.8e-11 71.2 38 94.7
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 3.2e-10 68.2 37 78.4
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 3.2e-10 68.2 37 78.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 6.0e-09 63.9 36 72.2
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 7.8e-09 63.5 36 72.2
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.7e-08 62.4 36 66.7
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.7e-08 62.4 36 66.7
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.7e-08 62.4 36 66.7
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 6.6e-08 60.5 55 54.5
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 1.9e-07 58.9 47 55.3
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 1.6e-06 55.8 39 61.5


User provided reference genes

Program Settings