Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 2.5e-209 731.9 368 100.0
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 3.4e-166 588.6 368 83.7
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 3.9e-154 548.5 360 79.7
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 1.0e-146 523.9 359 76.9
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 1.1e-145 520.4 346 77.2
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 3.1e-143 512.3 349 74.5
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 9.9e-142 507.3 348 73.3
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 4.9e-141 505.0 366 72.7
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 2.4e-140 502.7 343 76.7
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 2.7e-139 499.2 358 73.2
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 2.7e-139 499.2 317 78.9
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 6.0e-139 498.0 299 82.9
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 7.9e-139 497.7 347 73.5
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 1.0e-138 497.3 326 75.8
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 1.0e-138 497.3 304 79.9
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 1.3e-138 496.9 341 75.1
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 1.8e-138 496.5 345 74.8
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 2.3e-138 496.1 299 82.3
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 2.3e-138 496.1 341 74.2
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 5.1e-138 495.0 363 72.2
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 6.7e-138 494.6 364 71.7
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 1.1e-137 493.8 345 71.9
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 1.5e-137 493.4 302 80.5
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.5e-137 492.7 306 80.4
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 2.5e-137 492.7 321 77.3
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 2.5e-137 492.7 358 72.3
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 2.1e-136 489.6 325 75.7
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 2.1e-136 489.6 342 73.1
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 2.8e-136 489.2 296 80.7
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 2.8e-136 489.2 342 73.4
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 4.8e-136 488.4 342 73.7
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 4.8e-136 488.4 354 71.8
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 8.1e-136 487.6 317 77.3
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 1.4e-135 486.9 318 76.4
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 1.4e-135 486.9 308 79.5
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 1.8e-135 486.5 353 71.7
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 1.8e-135 486.5 336 73.8
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 2.4e-135 486.1 349 71.9
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 4.0e-135 485.3 350 72.9
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 1.2e-134 483.8 329 75.7
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 2.0e-134 483.0 318 77.7
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 2.0e-134 483.0 303 80.2
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 2.6e-134 482.6 344 73.0
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 5.8e-134 481.5 323 75.9
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 3.8e-133 478.8 297 80.5
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 3.8e-133 478.8 365 68.2
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.1e-132 477.2 314 77.7
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 1.1e-132 477.2 347 71.8
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 1.1e-132 477.2 300 78.3
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 2.4e-132 476.1 355 71.5
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 5.5e-132 474.9 380 67.6
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 5.5e-132 474.9 354 70.9
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 2.7e-131 472.6 319 75.9
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 4.6e-131 471.9 352 69.6
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 4.6e-131 471.9 402 64.4
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.0e-130 470.7 297 79.8
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 1.0e-130 470.7 335 73.1
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 1.3e-130 470.3 311 75.9
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 1.3e-130 470.3 346 69.7
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 2.3e-130 469.5 306 77.8
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 8.7e-130 467.6 281 80.4
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 4.3e-129 465.3 341 71.3
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 1.6e-128 463.4 319 74.6
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 8.2e-128 461.1 344 69.5
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 3.1e-127 459.1 310 74.8
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 6.9e-127 458.0 299 76.3
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 6.9e-127 458.0 310 74.8
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 1.5e-126 456.8 364 67.9
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 1.5e-126 456.8 341 69.8
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.0e-126 456.4 304 76.3
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.0e-126 456.4 304 76.3
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 2.0e-126 456.4 314 72.9
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 3.4e-126 455.7 338 69.5
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 4.5e-126 455.3 355 67.3
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 5.8e-126 454.9 334 70.1
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 4.9e-125 451.8 324 71.6
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 7.9e-123 444.5 331 69.5
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 2.3e-122 443.0 285 76.8
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 3.3e-121 439.1 297 74.1
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 1.4e-119 433.7 451 56.1
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 1.9e-116 423.3 297 71.7
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 3.9e-114 415.6 297 70.7
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 1.5e-113 413.7 310 69.4
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 1.4e-111 407.1 349 61.6
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 9.1e-111 404.4 322 64.9
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 2.0e-110 403.3 302 67.9
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 3.4e-110 402.5 461 51.4
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.6e-107 393.7 287 67.9
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 6.3e-104 381.7 397 53.1
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 2.9e-101 372.9 215 85.6
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 2.1e-99 366.7 320 60.6
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 1.5e-97 360.5 239 76.6
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 4.5e-94 349.0 209 83.3
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 3.5e-86 322.8 200 79.5
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 3.5e-86 322.8 170 93.5
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 4.5e-86 322.4 317 55.2
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 1.5e-84 317.4 298 59.7
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 6.8e-82 308.5 196 80.1
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.7e-77 293.9 187 80.2
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.8e-77 292.7 187 79.7
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 1.5e-76 290.8 165 87.9
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.4e-74 284.3 226 66.4
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 4.0e-74 282.7 226 66.4
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 7.5e-73 278.5 167 83.2
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.3e-72 277.7 189 77.8
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 4.9e-72 275.8 343 49.3
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 7.0e-71 271.9 261 52.1
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 8.0e-67 258.5 149 84.6
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 2.0e-62 243.8 189 67.2
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 4.3e-60 236.1 149 75.2
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 2.8e-59 233.4 271 48.3
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 1.2e-54 218.0 173 65.3
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 2.3e-50 203.8 141 70.2
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.5e-44 184.5 100 89.0
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 3.0e-37 160.2 97 75.3
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 5.4e-31 139.4 82 86.6
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 7.1e-31 139.0 238 35.7
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 4.3e-28 129.8 107 59.8
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.1e-22 110.9 258 33.3
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.1e-20 105.1 109 49.5
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 1.9e-15 87.8 48 79.2
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 2.8e-11 73.9 47 78.7
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.1e-07 62.0 71 49.3


User provided reference genes

Program Settings