Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 1.7e-48 195.7 96 100.0
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 8.9e-18 93.6 93 61.3
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 7.3e-12 73.9 68 60.3
CSS0044388 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 1.6e-11 72.8 67 59.7
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.2e-11 70.9 82 48.8
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.2e-11 70.9 82 48.8
Rhsim05G0122900 Rhododendron simsii HOM05D002165 ORTHO05D001531 1.4e-10 69.7 65 67.7
vmacro23432 Vaccinium macrocarpon HOM05D002165 ORTHO05D001531 1.4e-10 69.7 63 58.7
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 1.8e-10 69.3 75 54.7
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-10 69.3 82 47.6
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 2.4e-10 68.9 64 60.9
Oeu061905.1 Olea europaea HOM05D002165 ORTHO05D001531 4.0e-10 68.2 86 46.5
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 4.0e-10 68.2 86 50.0
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 4.0e-10 68.2 95 44.2
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.2e-10 67.8 82 47.6
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.8e-10 67.4 82 47.6
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 8.9e-10 67.0 57 57.9
Dinv30952 Davidia involucrata HOM05D002165 ORTHO05D001531 8.9e-10 67.0 70 60.0
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.9e-10 67.0 82 46.3
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.2e-09 66.6 82 45.1
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 1.5e-09 66.2 81 46.9
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.5e-09 66.2 82 47.6
Dinv24517 Davidia involucrata HOM05D002165 ORTHO05D001531 2.0e-09 65.9 69 56.5
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.6e-09 65.5 73 52.1
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 3.4e-09 65.1 70 50.0
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 4.4e-09 64.7 70 51.4
Dinv30951 Davidia involucrata HOM05D002165 ORTHO05D001531 5.8e-09 64.3 96 52.1
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.8e-09 64.3 61 52.5
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 7.6e-09 63.9 61 54.1
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 7.6e-09 63.9 61 54.1
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 9.9e-09 63.5 72 48.6
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 9.9e-09 63.5 58 56.9
Lsat_1_v5_gn_9_85041 Lactuca sativa HOM05D002165 ORTHO05D001531 9.9e-09 63.5 60 55.0
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 9.9e-09 63.5 82 53.7
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.3e-08 63.2 80 47.5
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.3e-08 63.2 82 43.9
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.3e-08 63.2 63 49.2
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.7e-08 62.8 72 48.6
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 1.7e-08 62.8 70 47.1
Eucgr.L03552 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-08 62.8 82 43.9
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 48.6
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 47.1
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-08 62.4 78 52.6
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 47.1
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 47.1
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 47.1
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 2.2e-08 62.4 78 52.6
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 2.2e-08 62.4 70 47.1
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 2.2e-08 62.4 78 52.6
DCAR_001887 Daucus carota HOM05D002165 ORTHO05D001531 3.8e-08 61.6 86 44.2
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 3.8e-08 61.6 91 41.8
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 4.9e-08 61.2 77 44.2
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 4.9e-08 61.2 77 44.2
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 4.9e-08 61.2 77 44.2
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 4.9e-08 61.2 77 44.2
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 4.9e-08 61.2 77 44.2
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 4.9e-08 61.2 82 48.8
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 4.9e-08 61.2 81 46.9
DCAR_002292 Daucus carota HOM05D002165 ORTHO05D001531 6.4e-08 60.8 86 43.0
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.4e-08 60.8 62 48.4
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.4e-08 60.8 62 48.4
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 6.4e-08 60.8 62 48.4
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 8.4e-08 60.5 91 44.0
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 8.4e-08 60.5 82 45.1
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.4e-08 60.5 82 45.1
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-07 60.1 70 45.7
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.1e-07 60.1 60 55.0
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.1e-07 60.1 94 41.5
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 1.1e-07 60.1 85 42.4
Actinidia22854 Actinidia chinensis HOM05D049884 ORTHO05D055390 1.4e-07 59.7 70 45.7
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.4e-07 59.7 63 54.0
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.9e-07 59.3 60 55.0
ECA236G2737 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.9e-07 59.3 72 40.3
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.9e-07 59.3 95 38.9
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 1.9e-07 59.3 61 50.8
CAN.G1248.15 Capsicum annuum HOM05D002165 ORTHO05D001531 2.4e-07 58.9 62 51.6
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 2.4e-07 58.9 95 42.1
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.2e-07 58.5 96 43.8
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 4.2e-07 58.2 90 42.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 4.2e-07 58.2 96 43.8
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 4.2e-07 58.2 96 43.8
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 4.2e-07 58.2 96 43.8
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.2e-07 58.2 95 37.9
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.2e-07 58.2 95 37.9
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 4.2e-07 58.2 90 38.9
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 5.4e-07 57.8 83 47.0
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 5.4e-07 57.8 83 47.0
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 5.4e-07 57.8 82 42.7
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 7.1e-07 57.4 96 43.8
Ca_10202_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.1e-07 57.4 91 40.7
Ca_10203_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.1e-07 57.4 91 40.7
ECA240G1387 Erigeron canadensis HOM05D002165 ORTHO05D001531 7.1e-07 57.4 78 46.2
Phvul.001G221900 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 7.1e-07 57.4 85 38.8
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 9.3e-07 57.0 90 41.1
arahy.Tifrunner.gnm1.ann1.R57IYC Arachis hypogaea HOM05D008018 ORTHO05D001531 9.3e-07 57.0 88 42.0
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 9.3e-07 57.0 73 47.9
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 9.3e-07 57.0 90 38.9
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 9.3e-07 57.0 96 43.8
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 9.3e-07 57.0 87 44.8
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 9.3e-07 57.0 78 44.9
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 1.2e-06 56.6 96 42.7
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 1.2e-06 56.6 96 42.7
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 1.2e-06 56.6 96 42.7
ECA236G1383 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.2e-06 56.6 60 51.7
ECA240G0021 Erigeron canadensis HOM05D002165 ORTHO05D001531 1.2e-06 56.6 78 44.9
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 1.2e-06 56.6 95 37.9
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.2e-06 56.6 95 37.9
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 1.2e-06 56.6 74 43.2
Lj5g0006453 Lotus japonicus HOM05D008018 ORTHO05D001531 1.2e-06 56.6 91 42.9
Lj5g0009947 Lotus japonicus HOM05D008018 ORTHO05D001531 1.2e-06 56.6 91 42.9
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 1.2e-06 56.6 95 40.0
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 1.2e-06 56.6 85 44.7
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.6e-06 56.2 96 41.7
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.6e-06 56.2 81 42.0
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 1.6e-06 56.2 81 42.0
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.1e-06 55.8 84 41.7
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.1e-06 55.8 84 41.7
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 2.1e-06 55.8 84 41.7
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.1e-06 55.8 85 42.4
Actinidia01661 Actinidia chinensis HOM05D001662 ORTHO05D007520 2.7e-06 55.5 65 50.8
Lj1g0006603 Lotus japonicus HOM05D008018 ORTHO05D001531 2.7e-06 55.5 93 39.8
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 2.7e-06 55.5 90 35.6
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 2.7e-06 55.5 87 44.8
Ca_10204_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.5e-06 55.1 92 39.1
Ca_10205_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.5e-06 55.1 90 40.0
Hma1.2p1_0759F.1_g213900 Hydrangea macrophylla HOM05D050867 ORTHO05D001531 3.5e-06 55.1 36 63.9
Hma1.2p1_0759F.1_g213905 Hydrangea macrophylla HOM05D050867 ORTHO05D001531 3.5e-06 55.1 36 63.9
Lsat_1_v5_gn_7_63620 Lactuca sativa HOM05D002165 ORTHO05D001531 3.5e-06 55.1 42 66.7
Lsat_1_v5_gn_9_84961 Lactuca sativa HOM05D002165 ORTHO05D001531 3.5e-06 55.1 59 47.5
Nitab4.5_0003573g0050 Nicotiana tabacum HOM05D002165 ORTHO05D001531 3.5e-06 55.1 62 45.2
Phvul.007G205200 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.5e-06 55.1 90 37.8
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.5e-06 55.1 85 42.4
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.5e-06 55.1 85 42.4
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 4.6e-06 54.7 78 47.4
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.6e-06 54.7 78 47.4
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.6e-06 54.7 72 47.2
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.6e-06 54.7 91 37.4
Oeu062782.1 Olea europaea HOM05D002165 ORTHO05D001531 4.6e-06 54.7 86 41.9
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 6.0e-06 54.3 73 46.6
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 6.0e-06 54.3 77 45.5
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 6.0e-06 54.3 77 45.5
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 6.0e-06 54.3 84 47.6
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 6.0e-06 54.3 96 41.7
Lalb_Chr02g0147531 Lupinus albus HOM05D008018 ORTHO05D001531 6.0e-06 54.3 74 40.5
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 7.8e-06 53.9 73 46.6
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 7.8e-06 53.9 73 46.6
ECA240G3359 Erigeron canadensis HOM05D002165 ORTHO05D001531 7.8e-06 53.9 58 53.4
Oeu062790.1 Olea europaea HOM05D002165 ORTHO05D001531 7.8e-06 53.9 86 40.7


User provided reference genes

Program Settings