Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.3e-114 416.4 210 100.0
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 2.4e-39 166.4 86 96.5
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 2.3e-34 149.8 210 45.7
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.1e-33 147.5 212 46.2
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.3e-33 145.6 211 46.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.7e-33 145.2 210 43.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 9.0e-31 137.9 87 79.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.6e-30 136.3 210 42.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.0e-29 134.4 210 41.4
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.0e-29 134.4 211 41.7
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 3.8e-29 132.5 210 41.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.0e-29 132.1 211 41.7
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 8.4e-29 131.3 92 75.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 8.4e-29 131.3 210 40.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.5e-28 129.8 211 40.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.5e-28 129.8 212 42.0
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 2.5e-28 129.8 209 41.1
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 6.1e-27 125.2 189 41.8
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.1e-25 120.9 111 62.2
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-25 120.9 210 36.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.5e-25 120.6 209 39.2
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.5e-25 119.8 210 40.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 2.5e-25 119.8 211 37.9
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.3e-25 119.4 208 38.9
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.3e-25 119.4 208 38.9
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 3.3e-25 119.4 208 38.9
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.3e-25 119.0 91 70.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 4.3e-25 119.0 111 63.1
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 5.7e-25 118.6 212 41.0
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 5.7e-25 118.6 210 38.6
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 5.7e-25 118.6 211 38.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 7.4e-25 118.2 94 66.0
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.4e-25 118.2 210 37.6
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 9.7e-25 117.9 212 38.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.6e-24 117.1 68 83.8
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.2e-24 116.7 111 61.3
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 2.2e-24 116.7 196 38.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.7e-24 115.9 113 58.4
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.7e-24 115.9 209 37.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.8e-24 115.5 91 65.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.8e-24 115.5 88 69.3
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 6.3e-24 115.2 91 68.1
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 6.3e-24 115.2 190 40.5
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 6.3e-24 115.2 110 58.2
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 6.3e-24 115.2 209 37.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.3e-24 115.2 92 63.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 8.2e-24 114.8 91 68.1
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 8.2e-24 114.8 91 67.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 8.2e-24 114.8 212 37.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.2e-24 114.8 68 82.4
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.1e-23 114.4 91 65.9
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.4e-23 114.0 94 70.2
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.8e-23 113.6 210 36.7
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.8e-23 113.6 212 37.7
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.8e-23 113.6 205 37.1
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-23 113.6 93 67.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.4e-23 113.2 92 68.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.4e-23 113.2 93 67.7
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 3.1e-23 112.8 193 37.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 3.1e-23 112.8 211 36.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.1e-23 112.8 216 35.2
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 4.1e-23 112.5 111 53.2
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.1e-23 112.5 91 67.0
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 5.3e-23 112.1 86 73.3
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.3e-23 112.1 210 36.7
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.9e-23 111.7 111 55.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 6.9e-23 111.7 88 69.3
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.9e-23 111.7 91 65.9
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 9.0e-23 111.3 68 82.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 9.0e-23 111.3 91 65.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-23 111.3 91 67.0
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 9.0e-23 111.3 210 37.6
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.2e-22 110.9 87 67.8
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.2e-22 110.9 212 37.3
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-22 110.9 211 36.5
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.5e-22 110.5 111 53.2
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.5e-22 110.5 92 64.1
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.0e-22 110.2 105 59.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.0e-22 110.2 111 52.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.6e-22 109.8 111 52.3
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.6e-22 109.8 111 52.3
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.6e-22 109.8 69 75.4
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.4e-22 109.4 111 54.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.4e-22 109.4 64 81.2
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.5e-22 109.0 111 52.3
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.5e-22 109.0 111 53.2
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.5e-22 109.0 77 70.1
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.5e-22 109.0 91 63.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.7e-22 108.2 96 63.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.7e-22 108.2 96 63.5
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 7.7e-22 108.2 112 53.6
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.0e-21 107.8 111 51.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.0e-21 107.8 73 71.2
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.3e-21 107.5 77 68.8
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.3e-21 107.5 93 66.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.3e-21 107.5 111 56.8
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.7e-21 107.1 111 52.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-21 107.1 89 64.0
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.2e-21 106.7 183 38.3
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.2e-21 106.7 183 38.3
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 2.2e-21 106.7 92 62.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.9e-21 106.3 91 60.4
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.8e-21 105.9 91 61.5
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 5.0e-21 105.5 111 51.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 5.0e-21 105.5 111 52.3
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.0e-21 105.5 98 59.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.5e-21 105.1 112 52.7
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 6.5e-21 105.1 91 60.4
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 8.5e-21 104.8 111 52.3
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.5e-21 104.8 97 58.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-20 104.4 111 50.5
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.1e-20 104.4 111 51.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.1e-20 104.4 72 70.8
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.1e-20 104.4 145 48.3
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.4e-20 104.0 62 80.6
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.4e-20 104.0 212 36.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.4e-20 104.0 111 50.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.2e-20 101.7 110 50.9
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.4e-20 101.3 80 65.0
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.2e-19 100.9 92 56.5
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.6e-19 100.5 111 53.2
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 6.1e-19 98.6 106 50.0
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.4e-18 97.4 84 63.1
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.3e-18 96.7 112 54.5
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.3e-18 96.7 88 59.1
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.9e-18 95.9 64 70.3
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 3.9e-18 95.9 96 57.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.1e-18 95.5 97 54.6
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 6.7e-18 95.1 84 60.7
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 8.8e-18 94.7 91 54.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 8.8e-18 94.7 112 53.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.1e-17 94.4 96 55.2
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.5e-17 94.0 91 57.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-17 93.6 61 68.9
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.0e-17 93.6 61 68.9
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.3e-17 92.8 60 75.0
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 4.3e-17 92.4 55 81.8
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 5.7e-17 92.0 53 83.0
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.7e-16 89.4 61 67.2
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.1e-15 85.9 74 60.8
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 2.0e-14 83.6 68 60.3
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 3.4e-14 82.8 56 69.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 5.9e-14 82.0 74 58.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 7.7e-14 81.6 74 58.1
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.5e-13 78.2 91 50.5
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-12 76.6 53 73.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.5e-12 76.6 53 73.6
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 5.5e-12 75.5 170 31.8
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.5e-12 75.5 52 63.5
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.1e-11 73.6 46 78.3
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.9e-10 69.3 50 74.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-08 62.4 44 70.5
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 4.1e-07 59.3 40 65.0
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-07 58.9 43 58.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-07 58.9 43 58.1
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.5e-06 57.4 51 52.9
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 3.5e-06 56.2 54 44.4


User provided reference genes

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