Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 3.7e-279 964.1 456 100.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 5.5e-174 614.8 469 67.4
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.3e-154 550.4 447 60.4
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 2.0e-152 543.1 447 60.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.3e-151 540.4 445 58.4
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 6.1e-149 531.6 455 58.0
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.1e-147 527.3 455 60.0
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 4.4e-147 525.4 449 57.0
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 5.7e-147 525.0 447 57.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 9.7e-147 524.2 450 56.4
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 2.2e-146 523.1 436 58.7
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.4e-145 519.6 445 57.5
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.3e-143 513.8 448 56.5
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.8e-143 512.3 451 56.1
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 5.0e-143 511.9 446 56.3
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 6.5e-143 511.5 449 55.9
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-142 510.4 451 55.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.2e-142 509.2 445 54.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 7.2e-142 508.1 437 56.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.6e-141 506.9 448 54.7
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.1e-141 506.5 437 56.1
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 2.1e-141 506.5 453 54.7
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.1e-141 506.5 449 54.8
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 8.0e-141 504.6 443 55.8
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.0e-140 504.2 446 54.7
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 2.3e-140 503.1 447 54.4
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 3.0e-140 502.7 449 55.0
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 5.2e-140 501.9 448 54.0
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 5.2e-140 501.9 451 54.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 5.2e-140 501.9 448 55.4
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 8.8e-140 501.1 451 53.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-139 500.7 453 53.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.5e-139 500.4 447 53.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.0e-139 500.0 448 55.1
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.6e-139 499.6 446 54.3
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.7e-139 498.4 448 53.6
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 7.5e-139 498.0 448 55.1
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 9.7e-139 497.7 447 53.9
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.2e-138 496.5 448 55.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 2.8e-138 496.1 448 54.9
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 4.8e-138 495.4 457 53.6
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.8e-138 495.4 445 54.2
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.3e-138 495.0 444 55.2
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 8.2e-138 494.6 452 52.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-137 493.8 448 54.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-137 493.8 448 54.9
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.1e-137 492.7 458 53.7
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 3.1e-137 492.7 445 55.1
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 5.3e-137 491.9 453 54.3
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 4.5e-136 488.8 441 54.2
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.3e-135 487.3 453 53.4
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 1.7e-135 486.9 455 53.2
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 2.2e-135 486.5 447 51.9
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 2.2e-135 486.5 441 54.0
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.9e-135 486.1 448 53.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 1.5e-134 483.8 449 51.7
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 3.2e-134 482.6 398 57.3
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 4.2e-134 482.3 436 53.2
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 7.2e-134 481.5 451 52.5
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 9.4e-134 481.1 444 53.8
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.2e-133 480.7 436 55.0
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.2e-133 480.7 452 53.1
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.2e-133 480.7 436 53.0
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.6e-133 480.3 448 52.9
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.1e-133 479.9 452 51.8
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 4.7e-133 478.8 453 53.2
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 6.1e-133 478.4 453 51.9
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 8.0e-133 478.0 499 50.1
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 8.0e-133 478.0 436 52.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.4e-132 477.2 453 51.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.8e-132 476.9 437 53.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 2.3e-132 476.5 444 52.0
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 4.0e-132 475.7 448 52.7
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.0e-132 475.7 447 52.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 6.8e-132 474.9 429 52.9
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 8.8e-132 474.6 448 52.5
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.5e-131 473.8 451 51.7
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 2.6e-131 473.0 451 51.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.6e-131 473.0 451 51.2
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 3.4e-131 472.6 451 51.0
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.7e-130 470.3 451 51.0
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.7e-130 470.3 451 51.0
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.2e-130 469.9 423 54.1
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 6.3e-130 468.4 446 51.1
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-129 467.6 409 55.5
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.4e-129 467.2 446 50.7
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.8e-129 466.8 409 55.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.4e-129 466.5 446 50.4
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 9.1e-129 464.5 409 55.0
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-128 464.2 409 55.3
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.0e-127 461.1 411 56.0
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.3e-127 459.9 449 49.9
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.5e-126 457.2 448 49.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 1.9e-126 456.8 427 53.2
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 4.2e-126 455.7 445 50.6
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.0e-124 451.1 446 50.9
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 3.0e-124 449.5 434 48.8
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-123 447.6 446 48.4
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.7e-122 442.6 451 50.3
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 4.9e-122 442.2 453 49.2
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.7e-119 433.7 450 49.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 3.8e-119 432.6 403 55.6
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.1e-118 431.0 450 49.1
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 2.5e-118 429.9 440 50.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.0e-116 424.5 452 50.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.4e-116 424.1 458 48.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 1.4e-116 424.1 422 49.5
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.2e-115 421.0 446 48.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 4.4e-115 419.1 447 47.2
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-107 394.4 366 53.6
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.6e-107 393.3 366 53.3
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.2e-106 390.2 366 53.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 4.1e-105 386.0 358 53.9
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 9.5e-102 374.8 353 53.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.7e-98 362.8 378 47.9
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.2e-96 357.8 426 43.7
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.5e-91 340.9 228 64.9
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.9e-91 338.2 416 46.9
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 9.2e-89 331.6 420 41.7
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.1e-85 320.5 318 50.0
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.4e-83 312.8 340 47.4
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 9.6e-78 295.0 454 37.2
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-76 291.6 296 48.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 2.0e-75 287.3 192 69.3
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.4e-75 286.6 454 35.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.7e-74 284.3 451 37.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.8e-74 283.1 358 42.2
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.9e-74 282.7 420 38.6
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 4.2e-73 279.6 306 45.4
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 6.7e-71 272.3 452 35.2
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 1.1e-70 271.6 321 43.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.5e-67 261.2 397 37.5
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 7.9e-64 248.8 273 46.9
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.2e-61 239.2 294 42.9
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.5e-59 233.0 298 42.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.8e-59 232.6 153 73.9
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.9e-54 217.6 158 63.9
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 8.5e-50 202.2 132 66.7
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 5.7e-46 189.5 142 60.6
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 3.3e-38 163.7 220 40.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 2.3e-31 141.0 106 62.3
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.3e-29 135.2 107 58.9
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.1e-28 130.6 97 61.9
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.2e-26 124.4 97 59.8
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 8.8e-23 112.5 97 50.5


User provided reference genes

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