Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 2387.5 1212 100.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 2098.9 1220 89.3
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1929.8 1213 83.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1879.4 1213 81.5
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1865.1 1212 80.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1850.1 1212 80.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1849.3 1212 79.6
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1848.9 1212 79.6
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1848.2 1210 79.4
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1845.1 1212 80.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1843.6 1212 79.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1835.8 1212 79.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1822.0 1213 78.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1821.2 1222 78.6
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1818.5 1212 79.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1818.5 1212 78.9
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1814.7 1211 78.4
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1812.0 1212 78.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1808.1 1213 78.5
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1805.4 1212 78.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1803.1 1212 78.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1803.1 1212 78.5
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1801.9 1212 78.5
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1794.6 1250 76.7
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1792.7 1222 78.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1789.6 1212 77.9
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1789.2 1246 76.9
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1787.3 1250 76.6
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1783.8 1211 77.4
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1783.5 1250 76.6
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1781.1 1212 77.3
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1779.6 1211 77.4
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1777.7 1211 77.3
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1772.7 1212 76.7
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1769.2 1212 76.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1762.7 1266 73.7
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1757.3 1208 76.1
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1754.6 1217 76.3
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1748.4 1269 73.8
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1746.9 1211 76.0
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1743.4 1236 75.2
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1743.0 1213 75.8
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1741.9 1223 75.0
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1248 74.5
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1248 74.5
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1213 75.8
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1213 76.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1740.3 1236 75.2
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1737.2 1215 76.5
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1734.5 1209 75.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1733.8 1215 74.8
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1203 75.6
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1731.5 1216 75.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1207 75.9
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1207 75.7
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1729.9 1212 75.1
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1239 74.8
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1216 75.4
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1723.0 1211 74.5
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1723.0 1211 74.4
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1721.1 1214 75.0
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1212 75.3
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1719.1 1212 75.0
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1718.7 1211 74.1
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1714.1 1213 74.5
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1713.4 1213 73.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1707.2 1215 74.7
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1703.3 1208 74.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1695.2 1205 74.2
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1208 75.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1692.2 1220 73.9
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1690.6 1218 74.5
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1687.5 1215 73.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1686.8 1269 71.3
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1255 72.0
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1216 73.6
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1684.1 1217 73.8
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1217 73.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1681.4 1231 73.9
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1679.5 1215 73.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1679.1 1214 72.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1677.9 1216 73.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1677.9 1217 73.1
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1677.5 1212 73.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1677.5 1217 73.3
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1247 72.6
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1676.8 1212 74.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1672.1 1222 73.3
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1668.3 1216 73.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1667.9 1214 72.8
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1667.5 1271 70.6
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1664.4 1214 72.9
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1662.5 1219 72.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1659.8 1218 71.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1659.0 1211 73.9
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1656.7 1224 73.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1655.6 1211 72.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1654.4 1214 72.2
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1654.0 1212 73.2
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1651.3 1221 71.5
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1650.2 1191 73.0
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1648.3 1214 72.1
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1212 72.0
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1208 72.8
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1641.3 1218 72.5
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1641.3 1140 75.9
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1634.8 1218 72.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1633.2 1116 77.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1627.8 1215 72.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1615.5 1215 71.9
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1614.0 1227 71.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1573.1 1185 71.0
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1554.7 966 83.6
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1553.9 1217 68.4
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1546.9 1215 67.9
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1534.2 1214 67.9
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1522.3 1218 67.2
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1518.8 1218 66.9
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1494.2 1149 70.8
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1459.9 966 78.4
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1458.7 1215 66.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1405.6 1061 72.4
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1401.7 1215 64.2
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1364.0 989 74.8
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1359.7 984 73.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1335.5 996 73.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1315.1 972 72.9
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1271.9 983 71.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1260.4 1216 59.6
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1246.1 912 72.6
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1184.1 820 76.0
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1167.1 838 74.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1127.1 836 72.1
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1116.3 827 73.2
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.5e-311 1070.8 1211 54.0
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 4.8e-302 1041.6 748 74.9
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.0e-283 980.7 1218 47.6
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.8e-277 959.9 1239 46.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 4.1e-277 958.7 556 87.1
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.1e-256 891.0 749 66.5
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 6.8e-256 888.3 606 78.9
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.3e-192 676.0 448 77.5
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.1e-164 584.3 376 78.5
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 9.5e-157 558.9 918 43.2
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.0e-142 512.3 323 79.3
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 7.3e-133 479.6 321 75.4
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 7.3e-133 479.6 321 75.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.9e-128 464.9 634 46.2
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.7e-118 431.8 306 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.0e-110 406.0 830 33.6
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 7.4e-101 373.2 1330 27.7
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 4.5e-98 364.0 235 77.0
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 7.1e-88 330.1 206 81.6
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.3e-86 325.1 514 43.2
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.1e-83 314.7 282 63.5
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 6.9e-83 313.5 203 77.3
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.7e-79 301.6 187 82.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.1e-72 279.6 181 74.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.9e-72 278.9 257 61.9
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.5e-66 258.1 191 71.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.8e-62 245.7 144 84.7
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.5e-61 242.7 182 68.7
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 4.2e-56 224.6 187 63.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 7.5e-53 213.8 130 84.6
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 7.2e-48 197.2 118 84.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.7e-47 194.5 125 77.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 3.4e-37 161.8 92 89.1
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.0e-26 125.9 86 73.3
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.7e-26 125.6 91 68.1
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.7e-26 125.6 91 68.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.3e-20 106.7 88 65.9
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 2.9e-20 105.5 83 66.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 8.6e-17 94.0 99 55.6
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.5e-16 93.2 59 76.3
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 3.3e-16 92.0 46 84.8
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.6e-15 88.6 139 43.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.2e-12 79.3 78 50.0


User provided reference genes

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