Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 4.2e-226 787.7 406 100.0
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 2.8e-89 333.2 226 78.8
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 3.8e-78 296.2 221 72.4
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 7.2e-77 292.0 228 72.8
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 1.3e-70 271.2 225 68.9
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 1.6e-68 264.2 204 69.1
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.8e-67 260.8 215 65.6
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 2.3e-67 260.4 215 66.5
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 2.3e-67 260.4 216 65.3
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 6.8e-67 258.8 221 64.7
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 1.2e-66 258.1 206 65.5
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.5e-66 257.7 215 65.1
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 1.5e-66 257.7 206 65.5
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 2.0e-66 257.3 206 66.5
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 9.8e-66 255.0 223 63.7
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 9.8e-66 255.0 219 61.6
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 2.8e-65 253.4 223 66.4
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 3.7e-65 253.1 204 64.2
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 3.7e-65 253.1 226 63.3
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.4e-64 251.1 221 62.9
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 1.2e-63 248.1 210 62.9
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 2.0e-63 247.3 215 63.7
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 2.7e-63 246.9 210 63.3
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 3.5e-63 246.5 225 63.6
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 4.5e-63 246.1 222 60.4
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 3.9e-62 243.0 218 62.8
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 1.5e-61 241.1 219 62.1
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 4.3e-61 239.6 218 61.5
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 7.3e-61 238.8 210 61.0
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 9.5e-61 238.4 211 61.1
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.2e-60 238.0 209 61.2
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 1.6e-60 237.7 225 60.0
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 2.1e-60 237.3 226 56.6
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 3.6e-60 236.5 219 60.7
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 4.7e-60 236.1 209 60.8
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 4.7e-60 236.1 229 60.3
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 8.0e-60 235.3 230 58.7
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.4e-59 234.6 209 60.8
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 3.1e-59 233.4 219 60.3
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.0e-59 233.0 210 60.5
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 5.2e-59 232.6 218 56.9
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 8.9e-59 231.9 208 60.6
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 2.0e-58 230.7 205 60.0
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 3.4e-58 229.9 221 56.1
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 4.4e-58 229.6 213 59.6
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.7e-57 227.6 224 58.9
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 1.7e-57 227.6 211 60.7
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 1.1e-56 224.9 233 54.5
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.4e-56 224.6 224 58.5
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 1.9e-56 224.2 219 55.7
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.9e-56 224.2 229 55.0
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 3.2e-56 223.4 223 56.1
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 5.4e-56 222.6 213 60.1
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 9.2e-56 221.9 217 58.5
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.2e-55 221.5 215 56.7
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 1.6e-55 221.1 218 56.0
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 1.6e-55 221.1 218 56.0
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 1.6e-55 221.1 209 56.0
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 2.7e-55 220.3 220 57.3
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 3.5e-55 219.9 215 54.9
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 3.5e-55 219.9 221 58.8
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 7.8e-55 218.8 217 56.7
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.3e-54 218.0 218 53.7
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 1.7e-54 217.6 214 56.5
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 3.0e-54 216.9 221 57.0
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 1.1e-53 214.9 218 57.3
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 1.5e-53 214.5 220 57.3
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 1.5e-53 214.5 197 54.3
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 1.9e-53 214.2 218 57.3
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 5.6e-53 212.6 208 57.2
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 7.3e-53 212.2 219 56.6
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 7.3e-53 212.2 224 51.8
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.6e-52 211.1 223 52.9
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.8e-52 210.3 211 55.9
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 3.6e-52 209.9 221 53.4
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 4.7e-52 209.5 220 53.6
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 6.2e-52 209.1 206 61.2
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 6.2e-52 209.1 214 54.7
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 1.4e-51 208.0 219 51.6
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 2.3e-51 207.2 200 57.0
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 5.2e-51 206.1 217 53.5
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 1.2e-50 204.9 215 54.0
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.5e-50 204.5 214 53.7
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 1.5e-50 204.5 240 51.7
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 5.8e-50 202.6 216 54.2
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 9.8e-50 201.8 209 54.1
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 2.2e-49 200.7 208 53.8
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 3.7e-49 199.9 220 55.0
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 4.9e-49 199.5 218 51.4
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 4.9e-49 199.5 217 55.3
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 1.1e-48 198.4 221 51.1
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 1.1e-48 198.4 214 50.9
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.9e-48 197.6 195 56.4
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 2.4e-48 197.2 211 55.5
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.4e-48 196.1 194 56.2
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.6e-47 194.5 222 49.5
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 6.0e-47 192.6 213 54.5
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 7.8e-47 192.2 220 50.5
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 1.3e-46 191.4 220 50.5
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 1.3e-46 191.4 220 50.5
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 3.0e-46 190.3 254 47.2
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 3.9e-46 189.9 220 50.0
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 1.1e-45 188.3 207 52.2
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 2.5e-45 187.2 247 47.8
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.3e-45 186.8 211 52.1
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.3e-45 186.8 224 50.4
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.1e-44 184.1 180 61.1
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 4.7e-44 183.0 216 50.0
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 6.8e-43 179.1 191 51.8
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 6.8e-43 179.1 212 48.6
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 2.9e-41 173.7 186 51.1
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 9.2e-40 168.7 183 51.4
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 4.6e-39 166.4 195 50.3
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 6.0e-39 166.0 195 50.3
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 3.9e-38 163.3 194 50.5
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 3.3e-37 160.2 194 50.0
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 7.3e-37 159.1 172 52.9
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 9.5e-37 158.7 185 50.8
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.6e-36 157.9 212 51.9
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 1.4e-35 154.8 209 46.4
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 1.1e-32 145.2 136 60.3
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 3.5e-31 140.2 212 42.0
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 3.2e-24 117.1 223 37.7
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 1.3e-20 105.1 225 38.7
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.9e-17 94.0 166 37.3
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 4.9e-17 93.2 78 67.9
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 1.4e-16 91.7 128 46.1
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 1.5e-13 81.6 92 52.2
Oeu016600.1 Olea europaea HOM05D006151 ORTHO05D007487 1.0e-06 58.9 58 51.7


User provided reference genes

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