Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 0.0e+00 1813.5 937 100.0
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.6e-103 381.7 357 65.3
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-53 215.7 327 46.8
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.0e-49 203.0 324 45.1
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 3.9e-49 201.1 269 48.3
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.2e-47 196.1 168 58.9
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 8.1e-47 193.4 150 64.0
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 8.1e-47 193.4 362 41.2
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.2e-45 189.5 257 47.1
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 5.8e-45 187.2 268 44.8
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 7.6e-45 186.8 398 39.2
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.7e-44 185.7 307 43.6
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.4e-43 182.6 398 38.7
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 2.4e-43 181.8 163 61.3
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 5.4e-43 180.6 409 38.1
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 5.4e-43 180.6 270 47.4
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 9.2e-43 179.9 269 43.1
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.2e-42 179.5 149 62.4
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.2e-42 179.5 179 55.9
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 2.1e-42 178.7 434 34.8
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 2.7e-42 178.3 243 45.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.6e-42 177.6 352 39.8
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 6.0e-42 177.2 243 45.7
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 6.0e-42 177.2 259 45.2
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 1.7e-41 175.6 224 46.4
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 1.7e-41 175.6 153 60.8
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.0e-41 174.9 177 53.1
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 3.9e-41 174.5 161 58.4
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 6.6e-41 173.7 379 36.9
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 6.6e-41 173.7 169 59.2
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 6.6e-41 173.7 288 43.1
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 8.6e-41 173.3 254 43.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 8.6e-41 173.3 175 52.6
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 3.3e-40 171.4 317 39.4
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 5.6e-40 170.6 234 43.2
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 1.2e-39 169.5 184 52.7
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 2.8e-39 168.3 348 39.1
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.8e-39 168.3 169 53.3
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 4.7e-39 167.5 394 36.3
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 4.7e-39 167.5 346 38.2
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.4e-38 166.0 156 55.8
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.0e-38 164.5 360 37.2
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 5.2e-38 164.1 248 46.4
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 6.9e-38 163.7 338 38.5
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 1.2e-37 162.9 297 39.7
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 1.2e-37 162.9 192 50.5
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.5e-37 162.5 161 55.9
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.0e-37 162.2 242 43.0
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 2.0e-37 162.2 296 41.2
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 2.6e-37 161.8 177 52.0
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.6e-37 161.8 185 51.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 3.4e-37 161.4 155 53.5
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 3.4e-37 161.4 261 39.1
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 4.4e-37 161.0 172 50.0
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 7.6e-37 160.2 229 45.0
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.3e-36 159.5 147 56.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.3e-36 159.5 236 45.8
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 3.8e-36 157.9 384 36.5
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 4.9e-36 157.5 152 53.3
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 6.4e-36 157.1 356 34.8
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 8.4e-36 156.8 144 56.2
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 8.4e-36 156.8 167 50.9
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 1.1e-35 156.4 152 52.6
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.1e-35 156.4 339 36.3
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 1.1e-35 156.4 235 43.4
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.1e-35 156.4 260 41.5
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.1e-35 156.4 285 41.1
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.9e-35 155.6 148 53.4
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.2e-35 154.8 269 42.4
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 3.2e-35 154.8 366 36.1
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 4.2e-35 154.5 156 54.5
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 7.1e-35 153.7 253 43.1
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 9.3e-35 153.3 149 52.3
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 1.6e-34 152.5 244 41.0
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.1e-34 152.1 158 51.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.7e-34 151.8 329 38.9
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.5e-34 151.4 149 52.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 4.6e-34 151.0 149 52.3
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.3e-33 149.4 367 35.1
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 3.0e-33 148.3 175 51.4
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 3.0e-33 148.3 353 35.1
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 5.1e-33 147.5 391 33.8
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.5e-32 146.0 194 47.4
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 4.3e-32 144.4 349 34.7
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 7.3e-32 143.7 370 35.9
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 7.3e-32 143.7 171 49.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 9.6e-32 143.3 317 36.0
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 9.6e-32 143.3 145 51.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 2.1e-31 142.1 263 42.2
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 2.8e-31 141.7 359 32.9
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 2.8e-31 141.7 360 33.3
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.6e-31 141.4 145 51.0
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 4.8e-31 141.0 166 50.6
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 8.1e-31 140.2 202 43.6
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 1.4e-30 139.4 376 36.2
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.4e-30 138.7 373 35.1
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 5.3e-30 137.5 183 44.8
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 9.0e-30 136.7 352 33.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.5e-29 136.0 140 50.7
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 1.5e-29 136.0 194 43.8
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 2.6e-29 135.2 206 40.3
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 5.8e-29 134.0 138 50.7
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 7.6e-29 133.7 241 39.0
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.3e-28 132.9 235 38.7
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.1e-27 129.8 359 34.3
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 2.4e-27 128.6 163 48.5
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 3.9e-25 121.3 135 48.1
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.1e-24 119.8 260 36.9
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.5e-24 119.4 135 45.9
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 1.5e-24 119.4 135 45.9
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 3.3e-24 118.2 149 43.0
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 4.3e-24 117.9 190 39.5
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 7.4e-24 117.1 147 44.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 3.6e-23 114.8 150 42.0
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.1e-22 113.2 283 36.0
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 4.0e-22 111.3 96 59.4
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 4.0e-22 111.3 394 28.9
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 2.0e-21 109.0 297 33.7
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 3.8e-20 104.8 261 34.9
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 4.9e-20 104.4 107 52.3
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 9.3e-19 100.1 238 34.5
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 6.0e-18 97.4 230 35.7
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.0e-17 96.7 191 37.2
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 1.5e-16 92.8 136 41.9
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 7.4e-16 90.5 289 29.4
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 1.4e-14 86.3 217 33.2
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.4e-11 76.3 71 54.9
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 9.3e-11 73.6 119 40.3
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 6.0e-10 70.9 311 28.6
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 2.5e-08 65.5 110 32.7
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 9.6e-08 63.5 131 34.4
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 4.8e-07 61.2 53 58.5
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.8e-06 59.3 103 29.1


User provided reference genes

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