Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.0e-247 857.1 429 100.0
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.3e-212 743.0 450 84.7
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.1e-195 686.8 449 79.5
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.7e-161 573.2 450 65.8
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 5.7e-157 558.1 456 64.7
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 5.7e-157 558.1 456 64.7
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.3e-145 520.4 441 60.3
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 4.3e-128 462.2 454 54.0
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 6.2e-127 458.4 423 58.2
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 4.0e-126 455.7 440 53.0
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.4e-123 446.4 440 52.3
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 7.0e-123 444.9 458 52.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 7.0e-123 444.9 439 51.7
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 9.2e-123 444.5 442 51.1
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 2.7e-122 443.0 442 51.1
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 3.5e-122 442.6 440 52.0
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 6.0e-122 441.8 436 51.8
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 7.8e-122 441.4 443 51.7
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 1.3e-121 440.7 450 51.1
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.9e-120 436.8 416 52.2
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 5.6e-120 435.3 434 50.7
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 9.5e-120 434.5 436 50.7
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 1.2e-119 434.1 449 51.0
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 3.6e-119 432.6 434 50.2
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 3.6e-119 432.6 430 52.3
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 2.3e-118 429.9 440 50.2
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 2.0e-117 426.8 446 50.2
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 4.9e-116 422.2 438 51.6
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 8.3e-116 421.4 416 51.0
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.1e-115 421.0 445 48.8
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.4e-115 420.6 417 51.1
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 5.4e-115 418.7 428 47.4
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 7.1e-115 418.3 414 50.5
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 7.1e-115 418.3 414 50.5
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 1.2e-114 417.5 440 49.1
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 1.2e-114 417.5 440 49.1
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 7.8e-114 414.8 450 49.6
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.3e-113 414.1 430 48.8
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 3.9e-113 412.5 415 49.9
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 7.3e-112 408.3 416 49.8
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 7.3e-112 408.3 415 48.4
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 2.1e-111 406.8 424 49.8
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.8e-111 406.4 423 50.8
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 4.7e-111 405.6 415 49.6
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 1.1e-110 404.4 427 49.2
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.8e-110 403.7 435 49.7
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 6.8e-110 401.7 427 48.7
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 6.8e-110 401.7 425 47.1
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 2.6e-109 399.8 443 47.4
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 7.6e-109 398.3 418 50.0
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.3e-108 397.5 431 48.0
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 4.9e-108 395.6 415 48.4
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 9.2e-107 391.3 437 49.0
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 1.6e-106 390.6 421 48.7
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.1e-106 390.2 438 46.6
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 3.3e-104 382.9 441 45.8
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 9.6e-104 381.3 419 48.0
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 6.2e-103 378.6 417 47.7
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 8.1e-103 378.3 418 47.1
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 8.1e-103 378.3 418 46.9
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.1e-102 376.3 433 47.6
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.0e-101 373.6 415 45.8
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 3.8e-100 369.4 427 47.5
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 2.1e-98 363.6 451 45.7
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 7.8e-98 361.7 449 45.4
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.8e-95 353.2 352 49.7
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.8e-94 350.5 448 43.3
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 4.0e-94 349.4 448 45.5
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 4.5e-93 345.9 358 49.7
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 2.2e-92 343.6 417 44.1
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 8.4e-92 341.7 415 42.7
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.6e-90 337.4 411 43.6
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 2.7e-90 336.7 429 45.9
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.0e-89 334.7 405 44.7
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 1.8e-89 334.0 418 42.6
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 9.6e-88 328.2 417 44.6
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.1e-86 324.7 444 42.1
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 1.4e-86 324.3 414 44.2
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 1.4e-86 324.3 444 42.1
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.8e-86 323.9 418 43.3
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.4e-86 323.6 431 41.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 4.0e-86 322.8 444 41.4
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 4.5e-85 319.3 446 40.4
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 5.8e-85 318.9 448 40.2
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.7e-84 317.4 422 42.9
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 3.2e-83 313.2 424 43.6
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 3.5e-82 309.7 450 40.0
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 2.5e-80 303.5 355 46.8
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 8.4e-76 288.5 421 39.7
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 9.3e-75 285.0 299 48.2
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 2.2e-71 273.9 453 35.1
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.4e-70 270.4 236 54.2
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 8.8e-65 251.9 244 48.8
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.3e-60 238.0 286 46.5
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.9e-59 234.2 214 52.3
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 4.2e-59 233.0 427 34.4
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 2.1e-58 230.7 299 41.1
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.7e-58 229.6 187 57.2
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 1.6e-45 188.0 411 30.9
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 9.4e-43 178.7 176 46.0
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 2.1e-42 177.6 415 29.6
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 8.0e-34 149.1 167 43.1
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.3e-33 147.5 173 43.9
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 8.6e-28 129.0 417 23.3
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 8.0e-26 122.5 144 43.8
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.4e-25 121.7 421 24.7
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.7e-21 107.5 205 41.0
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 3.9e-20 103.6 173 37.6
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 5.2e-17 93.2 111 45.0
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.7e-15 88.2 137 38.7
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 4.3e-11 73.6 146 34.9
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 7.3e-11 72.8 226 27.4
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 9.5e-11 72.4 80 46.2
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.5e-11 72.4 80 46.2
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 6.2e-10 69.7 92 34.8
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-09 68.9 195 29.2
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 1.4e-09 68.6 108 32.4
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.8e-09 68.2 95 37.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.2e-08 65.5 96 35.4
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.5e-08 65.1 115 29.6
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.5e-08 65.1 115 29.6
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 2.0e-08 64.7 103 31.1
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.6e-08 64.3 128 34.4
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 3.4e-08 63.9 97 30.9
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 3.4e-08 63.9 91 31.9
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 4.4e-08 63.5 80 43.8
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.5e-08 62.8 94 31.9
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.5e-08 62.8 94 31.9
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 9.8e-08 62.4 94 30.9
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 9.8e-08 62.4 94 28.7
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 9.8e-08 62.4 94 31.9
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-07 61.6 93 39.8
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 2.2e-07 61.2 94 33.0
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 3.7e-07 60.5 70 44.3
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 3.7e-07 60.5 91 28.6
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 6.4e-07 59.7 95 30.5
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 1.1e-06 58.9 95 30.5
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 3.2e-06 57.4 95 29.5


User provided reference genes

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