Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 2.3e-149 532.3 293 100.0
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.3e-64 250.8 306 55.9
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 5.3e-53 212.2 321 50.2
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 5.3e-53 212.2 321 50.2
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 2.6e-52 209.9 321 50.5
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 2.2e-51 206.8 314 48.7
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 3.2e-50 203.0 314 47.8
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.0e-48 198.0 306 49.7
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 1.0e-48 198.0 304 48.0
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.0e-48 198.0 309 49.8
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 1.7e-48 197.2 312 50.0
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 2.3e-48 196.8 309 50.2
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 4.3e-47 192.6 310 49.4
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 5.6e-47 192.2 319 50.2
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 7.3e-47 191.8 312 50.3
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 1.6e-46 190.7 308 51.3
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.4e-45 187.6 318 45.9
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 6.9e-45 185.3 314 45.9
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 3.4e-44 183.0 307 46.9
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 9.9e-44 181.4 312 43.9
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 4.9e-43 179.1 316 42.7
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 7.1e-42 175.3 328 43.3
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 7.1e-42 175.3 316 41.8
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 2.1e-41 173.7 319 47.0
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.1e-37 161.4 305 43.0
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 2.0e-36 157.1 314 38.5
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 3.4e-36 156.4 318 45.0
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 4.5e-36 156.0 329 44.1
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.1e-34 151.4 317 42.0
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.2e-33 147.9 316 42.1
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.3e-32 144.4 329 43.2
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 3.9e-32 142.9 341 34.9
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 3.9e-32 142.9 326 44.2
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 1.1e-29 134.8 329 41.3
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 2.4e-29 133.7 323 41.5
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 5.3e-29 132.5 342 39.5
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 6.9e-29 132.1 340 40.9
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.5e-28 131.0 324 40.4
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 3.4e-28 129.8 334 41.3
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 1.3e-27 127.9 304 43.4
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 1.7e-27 127.5 298 37.6
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 3.8e-27 126.3 310 39.7
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 3.8e-27 126.3 338 39.6
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 3.2e-26 123.2 196 43.4
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 4.2e-26 122.9 322 40.1
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 9.3e-26 121.7 160 50.0
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 9.3e-26 121.7 303 42.6
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.1e-25 120.6 223 42.2
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.8e-24 117.5 301 39.2
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 3.0e-24 116.7 310 40.0
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 6.7e-24 115.5 315 41.0
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 8.7e-24 115.2 310 41.0
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 7.4e-23 112.1 313 39.6
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 3.7e-22 109.8 335 36.7
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 4.8e-22 109.4 343 38.5
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.1e-21 108.2 376 31.6
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 5.3e-21 105.9 342 36.0
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 9.0e-21 105.1 315 40.3
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.2e-20 104.8 350 38.9
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 2.6e-20 103.6 225 38.7
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 5.9e-20 102.4 345 38.0
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 3.8e-19 99.8 366 38.0
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 1.4e-18 97.8 330 35.5
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 4.2e-18 96.3 316 32.9
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 6.1e-17 92.4 343 34.4
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.4e-16 91.3 342 33.6
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.4e-16 91.3 341 34.9
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.3e-16 90.5 191 39.8
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 8.8e-16 88.6 179 40.8
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 1.1e-15 88.2 342 33.6
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 2.0e-15 87.4 166 43.4
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 2.2e-14 84.0 344 34.0
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 1.1e-13 81.6 305 35.1
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.8e-13 80.9 350 32.6
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 3.1e-13 80.1 319 37.3
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 5.3e-13 79.3 340 31.8
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 9.1e-13 78.6 206 36.9
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 2.0e-12 77.4 223 36.8
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 1.0e-11 75.1 293 37.5
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 2.9e-11 73.6 362 31.8
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 8.5e-11 72.0 339 31.3
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 1.9e-10 70.9 339 31.3
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 2.5e-10 70.5 186 33.3
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 9.4e-10 68.6 399 26.6
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 9.4e-10 68.6 346 32.4
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 9.4e-10 68.6 346 32.4
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 1.2e-09 68.2 346 32.4
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 8.8e-08 62.0 169 35.5
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 2.6e-07 60.5 239 38.1


User provided reference genes

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