Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0070900 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-167 592.8 283 100.0
Rhsim01G0139300 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.7e-32 144.1 181 44.2
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-27 127.5 160 41.2
Rhsim08G0178900 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.4e-26 123.6 112 52.7
Rhsim04G0047200 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.1e-26 123.2 112 51.8
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.9e-24 115.9 112 51.8
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 6.5e-24 115.5 83 55.4
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.5e-24 115.5 112 51.8
Rhsim08G0131400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.1e-18 96.3 107 44.9
Rhsim06G0102000 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.5e-17 92.8 270 25.9
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.9e-16 90.1 80 48.8
RhsimUnG0053200 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.9e-16 90.1 97 43.3
CSS0025077 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.2e-15 86.7 106 40.6
Rhsim11G0149500 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-14 84.7 161 35.4
CSS0033977 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-14 84.3 177 29.9
Rhsim01G0171900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.0e-13 81.6 86 44.2
CSS0018353 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 8.2e-11 72.0 200 25.5
CSS0017315 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.4e-10 70.5 97 36.1
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-10 70.5 100 37.0
Dinv11369 Davidia involucrata HOM05D000003 ORTHO05D000126 6.9e-10 68.9 78 35.9
Rhsim09G0064700 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.1e-10 68.6 78 42.3
Rhsim01G0110800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-09 68.2 75 44.0
TAR682G0005 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.2e-09 68.2 76 44.7
Rhsim05G0112800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-09 67.8 75 42.7
Rhsim09G0090900 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.5e-09 67.8 76 42.1
Rhsim07G0114000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.0e-09 67.4 75 41.3
RhsimUnG0081000 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.0e-09 67.4 76 42.1
FvH4_4g06792 Fragaria vesca HOM05D000003 ORTHO05D000006 2.6e-09 67.0 80 35.0
Rhsim03G0083500 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.6e-09 67.0 76 36.8
Rhsim11G0048600 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.6e-09 67.0 77 37.7
Dinv38129 Davidia involucrata HOM05D000003 ORTHO05D000006 3.4e-09 66.6 78 33.3
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.4e-09 66.6 80 41.2
Rhsim03G0080200 Rhododendron simsii HOM05D000003 ORTHO05D000019 3.4e-09 66.6 76 40.8
Rhsim03G0167500 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.4e-09 66.6 76 42.1
COL.COLO4_26026 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.5e-09 66.2 83 38.6
Dinv24168 Davidia involucrata HOM05D000723 ORTHO05D001760 5.9e-09 65.9 102 29.4
Rhsim12G0187500 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.9e-09 65.9 76 38.2
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 5.9e-09 65.9 112 33.0
Dinv31302 Davidia involucrata HOM05D000003 ORTHO05D000006 7.7e-09 65.5 119 30.3
Rhsim02G0177800 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.7e-09 65.5 84 36.9
TAR346G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 7.7e-09 65.5 112 32.1
Dinv44808 Davidia involucrata HOM05D000003 ORTHO05D000126 1.7e-08 64.3 78 33.3
Rhsim02G0152800 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.2e-08 63.9 76 36.8
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 2.2e-08 63.9 75 41.3
vmacro07385 Vaccinium macrocarpon HOM05D000103 ORTHO05D000049 2.9e-08 63.5 70 44.3
Rhsim04G0150700 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.0e-08 62.8 105 33.3
Rhsim04G0242400 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.0e-08 62.8 76 38.2
Dinv13289 Davidia involucrata HOM05D000003 ORTHO05D000006 6.5e-08 62.4 78 33.3
TAR405G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 6.5e-08 62.4 136 30.9
Dinv43698 Davidia involucrata HOM05D000003 ORTHO05D000006 8.5e-08 62.0 79 39.2
Lj7C421G1 Lonicera japonica HOM05D000003 ORTHO05D000006 8.5e-08 62.0 76 35.5
Rhsim01G0175200 Rhododendron simsii HOM05D000003 ORTHO05D000006 8.5e-08 62.0 72 38.9
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 8.5e-08 62.0 113 31.9
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 61.6 75 38.7
Rhsim03G0009500 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 61.6 76 39.5
Rhsim08G0012100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 61.6 75 40.0
Rhsim09G0070000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 61.6 77 39.0
Dinv12801 Davidia involucrata HOM05D000003 ORTHO05D000006 1.4e-07 61.2 78 33.3
Rhsim02G0217100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.2 72 38.9
Rhsim03G0080700 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.2 76 36.8
Rhsim08G0119400 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.2 78 35.9
Rhsim09G0083100 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.4e-07 61.2 72 41.7
Rhsim01G0274800 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.9e-07 60.8 72 40.3
Rhsim02G0229500 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.2e-07 60.1 139 30.2
Dinv11321 Davidia involucrata HOM05D000003 ORTHO05D000006 4.2e-07 59.7 127 26.0
PSO541G3713 Papaver somniferum HOM05D000003 ORTHO05D000004 4.2e-07 59.7 80 40.0
Rhsim01G0161700 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.5e-07 59.3 78 37.2
Rhsim02G0134700 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.5e-07 59.3 77 36.4
Rhsim04G0083800 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.5e-07 59.3 148 25.0
Rhsim08G0247100 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.5e-07 59.3 75 38.7
Rhsim09G0106200 Rhododendron simsii HOM05D000003 ORTHO05D000126 5.5e-07 59.3 148 25.0
Rhsim13G0210000 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.5e-07 59.3 148 25.0
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 7.2e-07 58.9 118 32.2
Rhsim01G0092300 Rhododendron simsii HOM05D000003 ORTHO05D000006 7.2e-07 58.9 76 35.5
Rhsim01G0112200 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.2e-07 58.9 111 28.8
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.2e-07 58.9 80 38.8
TAR090G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000006 7.2e-07 58.9 70 38.6
Dinv31372 Davidia involucrata HOM05D000003 ORTHO05D000126 9.4e-07 58.5 92 27.2
PSO017G0957 Papaver somniferum HOM05D000003 ORTHO05D000006 9.4e-07 58.5 80 37.5
SGA_v2.0_scaffold107G30811 Striga asiatica HOM05D000003 ORTHO05D000006 9.4e-07 58.5 105 32.4
Aqoxy7G02069 Aquilegia oxysepala HOM05D000144 ORTHO05D000006 1.2e-06 58.2 156 25.0
FvH4_3g32112 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-06 58.2 81 37.0
PSO541G0240 Papaver somniferum HOM05D000003 ORTHO05D000006 1.2e-06 58.2 80 33.8
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 1.2e-06 58.2 76 36.8
Rhsim10G0093500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-06 57.8 69 36.2
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-06 57.8 69 36.2
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-06 57.0 78 35.9
PGSC0003DMG400009747 Solanum tuberosum HOM05D000003 ORTHO05D000006 2.7e-06 57.0 98 31.6
SGA_v2.0_scaffold74G24657 Striga asiatica HOM05D000003 ORTHO05D000006 2.7e-06 57.0 101 30.7
PSO339G0138 Papaver somniferum HOM05D000003 ORTHO05D000006 3.6e-06 56.6 80 32.5
PSO425G0059 Papaver somniferum HOM05D000003 ORTHO05D000004 3.6e-06 56.6 120 26.7
Rhsim09G0068100 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.6e-06 56.6 76 35.5
PSO063G0763 Papaver somniferum HOM05D000003 ORTHO05D000006 4.7e-06 56.2 120 29.2
RcHm_v2.0_Chr2g0133541 Rosa chinensis HOM05D000003 ORTHO05D000006 4.7e-06 56.2 80 36.2
TPR.G11081 Trifolium pratense HOM05D000024 ORTHO05D000006 4.7e-06 56.2 119 32.8
QL04p004520 Quercus lobata HOM05D000003 ORTHO05D000006 6.1e-06 55.8 81 37.0
QL09p011339 Quercus lobata HOM05D000003 ORTHO05D000006 6.1e-06 55.8 86 33.7
Lalb_Chr13g0290751 Lupinus albus HOM05D000003 ORTHO05D000004 7.9e-06 55.5 73 34.2
Nitab4.5_0000109g0450 Nicotiana tabacum HOM05D000024 ORTHO05D000006 7.9e-06 55.5 79 30.4
Rhsim02G0038900 Rhododendron simsii HOM05D000003 ORTHO05D000126 7.9e-06 55.5 111 27.9
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 7.9e-06 55.5 91 35.2
SHI36806 Sapria himalayana HOM05D000024 ORTHO05D000006 7.9e-06 55.5 138 30.4


User provided reference genes

Program Settings