Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0068400 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.2e-228 794.3 384 100.0
Rhsim11G0078600 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.0e-94 348.2 169 97.0
Rhsim11G0068300 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.2e-90 336.3 187 85.0
Rhsim11G0068600 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.2e-73 281.2 188 73.9
Rhsim11G0068200 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.6e-68 261.9 158 81.0
Rhsim11G0068100 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.9e-56 223.0 155 72.3
Rhsim11G0068900 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.5e-47 194.5 183 55.7
Rhsim11G0068800 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-46 191.4 161 61.5
Rhsim11G0069100 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.6e-46 191.0 182 56.0
RhsimUnG0091900 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.0e-45 185.3 519 31.0
RhsimUnG0092200 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.5e-41 173.3 212 48.1
Rhsim01G0013400 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.1e-34 151.8 272 37.5
CSS0003240 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 2.5e-31 140.6 202 39.6
CSS0006010 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 6.3e-30 136.0 195 40.5
Rhsim07G0025700 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.8e-27 126.7 228 36.8
CSS0031662 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 5.0e-27 126.3 183 38.8
CSS0037447 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 6.5e-27 125.9 162 41.4
Rhsim01G0013300 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.4e-26 124.8 205 36.6
Rhsim01G0014200 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.0e-24 118.6 169 41.4
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.7e-24 115.9 161 40.4
Rhsim01G0014800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.6e-23 114.0 163 41.7
Rhsim08G0168000 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.3e-23 113.6 180 36.7
RhsimUnG0091800 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.4e-23 112.5 181 39.2
Rhsim01G0017000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.2e-22 110.9 301 27.6
Rhsim01G0013500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.1e-21 108.6 161 39.8
Rhsim01G0013800 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.1e-21 108.6 182 36.8
CSS0008769 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 1.5e-20 104.8 180 35.0
Rhsim03G0248900 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.5e-20 104.8 184 34.2
Rhsim01G0018000 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.5e-20 103.2 224 31.2
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.9e-20 102.8 165 37.0
CSS0011530 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 7.7e-20 102.4 180 34.4
Rhsim01G0016900 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.7e-19 101.3 224 30.8
Rhsim01G0018700 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.7e-19 101.3 177 32.8
Rhsim01G0017100 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.9e-19 100.5 177 32.8
Rhsim07G0210200 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.5e-19 99.0 180 34.4
Rhsim01G0017500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.4e-18 98.2 157 38.2
Rhsim01G0018400 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.4e-18 98.2 195 30.3
Rhsim01G0016500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.9e-18 97.8 157 38.2
TAR626G1797 Trochodendron aralioides HOM05D000664 ORTHO05D000491 2.7e-17 94.0 196 34.7
Nitab4.5_0006345g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 4.7e-17 93.2 182 33.0
Nitab4.5_0004055g0050 Nicotiana tabacum HOM05D000664 ORTHO05D000491 6.7e-16 89.4 187 28.9
Rhsim04G0064800 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.3e-15 87.0 163 38.0
Dinv26464 Davidia involucrata HOM05D000664 ORTHO05D000491 5.7e-15 86.3 176 31.2
Nitab4.5_0000096g0150 Nicotiana tabacum HOM05D000664 ORTHO05D000491 7.4e-15 85.9 180 31.1
Nitab4.5_0000096g0170 Nicotiana tabacum HOM05D000664 ORTHO05D000491 9.7e-15 85.5 180 30.6
CSS0035483 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 1.3e-14 85.1 118 39.0
Rhsim01G0016800 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.8e-14 84.0 172 32.0
Rhsim01G0017900 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.7e-14 83.6 160 33.1
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 4.8e-14 83.2 193 31.6
Rhsim01G0017800 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.2e-14 82.4 184 31.0
PSO063G0730 Papaver somniferum HOM05D000664 ORTHO05D000491 1.8e-13 81.3 172 32.0
Rhsim13G0017400 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.4e-13 80.9 178 30.9
HanXRQChr16g0498261 Helianthus annuus HOM05D000664 ORTHO05D000491 3.5e-12 77.0 162 32.1
Prupe.1G066100 Prunus persica HOM05D000664 ORTHO05D000491 3.5e-12 77.0 166 33.1
HanXRQChr16g0524991 Helianthus annuus HOM05D000664 ORTHO05D000491 4.5e-12 76.6 205 28.8
Rhsim04G0065200 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.9e-12 76.3 160 33.1
FvH4_3g43790 Fragaria vesca HOM05D000664 ORTHO05D000491 7.7e-12 75.9 203 29.1
CAN.G1891.9 Capsicum annuum HOM05D000664 ORTHO05D000491 1.0e-11 75.5 161 31.1
HanXRQChr03g0067811 Helianthus annuus HOM05D000664 ORTHO05D000491 1.0e-11 75.5 206 25.7
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.0e-11 75.5 218 28.4
Rhsim08G0073100 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-11 75.1 109 44.0
Nitab4.5_0004790g0040 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.7e-11 74.7 221 27.6
TAR626G1309 Trochodendron aralioides HOM05D000664 ORTHO05D000491 2.2e-11 74.3 159 31.4
COL.COLO4_37362 Corchorus olitorius HOM05D000664 ORTHO05D000491 2.9e-11 73.9 163 30.1
CAN.G1891.7 Capsicum annuum HOM05D000664 ORTHO05D000491 3.8e-11 73.6 157 31.8
FAN21G1670 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.8e-11 73.6 173 30.1
Hma1.2p1_1883F.1_g306450 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 3.8e-11 73.6 159 29.6
FvH4_6g52830 Fragaria vesca HOM05D000664 ORTHO05D000491 5.0e-11 73.2 203 29.1
FvH4_6g52861 Fragaria vesca HOM05D000664 ORTHO05D000491 6.5e-11 72.8 203 29.1
FAN07G1045 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.5e-11 72.8 176 29.0
FAN14G3826 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.5e-11 72.8 203 29.1
Prupe.1G066300 Prunus persica HOM05D000664 ORTHO05D000491 6.5e-11 72.8 131 32.1
Rhsim01G0014100 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.5e-11 72.8 180 29.4
FAN17G0956 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-10 72.0 175 29.1
Sc09g0004440 Simmondsia chinensis HOM05D000664 ORTHO05D000491 1.1e-10 72.0 168 28.6
COL.COLO4_37350 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.5e-10 71.6 171 29.2
Rhsim01G0018500 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.5e-10 71.6 158 30.4
vmacro06138 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 1.5e-10 71.6 61 54.1
vmacro13067 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 1.5e-10 71.6 148 32.4
Duzib068G1024 Durio zibethinus HOM05D000664 ORTHO05D000491 1.9e-10 71.2 167 28.7
Rhsim04G0143000 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.9e-10 71.2 72 47.2
Thecc.05G238300 Theobroma cacao HOM05D000664 ORTHO05D000491 3.2e-10 70.5 181 28.2
Ciclev10005096m.g Citrus clementina HOM05D000664 ORTHO05D000491 4.2e-10 70.1 164 30.5
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 4.2e-10 70.1 165 29.1
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.2e-10 70.1 61 55.7
Sopen04g027220 Solanum pennellii HOM05D000173 ORTHO05D000316 5.5e-10 69.7 181 28.2
MD13G1235200 Malus domestica HOM05D000664 ORTHO05D000491 7.2e-10 69.3 174 28.2
Rhsim01G0018100 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.2e-10 69.3 169 24.9
Cfa020730 Carpinus fangiana HOM05D000664 ORTHO05D000491 9.4e-10 68.9 165 29.1
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.4e-10 68.9 85 45.9
COL.COLO4_38551 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.2e-09 68.6 147 34.0
Prupe.1G066200 Prunus persica HOM05D000664 ORTHO05D000491 1.2e-09 68.6 180 28.9
PSO729G0187 Papaver somniferum HOM05D000664 ORTHO05D000491 1.6e-09 68.2 190 30.0
FAN12G4320 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.1e-09 67.8 175 28.6
PSO210G5658 Papaver somniferum HOM05D000664 ORTHO05D000491 2.1e-09 67.8 164 30.5
RcHm_v2.0_Chr4g0398041 Rosa chinensis HOM05D000664 ORTHO05D000491 3.6e-09 67.0 129 31.8
FAN14G3348 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.7e-09 66.6 154 27.9
TAR626G1986 Trochodendron aralioides HOM05D000664 ORTHO05D000491 4.7e-09 66.6 167 25.7
Lj7C282T19 Lonicera japonica HOM05D000664 ORTHO05D000491 6.1e-09 66.2 194 31.4
Migut.J01669 Erythranthe guttata HOM05D000664 ORTHO05D000491 8.0e-09 65.9 133 33.8
Peaxi162Scf00111g01479 Petunia axillaris HOM05D000664 ORTHO05D000491 8.0e-09 65.9 163 28.2
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.0e-08 65.5 169 27.2
MELO3C005495.2 Cucumis melo HOM05D000664 ORTHO05D000491 1.4e-08 65.1 201 25.9
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.8e-08 64.7 173 29.5
Peaxi162Scf00725g00025 Petunia axillaris HOM05D000664 ORTHO05D000491 1.8e-08 64.7 169 27.2
Thecc.05G238400 Theobroma cacao HOM05D000664 ORTHO05D000491 1.8e-08 64.7 166 27.1
Duzib177G1156 Durio zibethinus HOM05D000664 ORTHO05D000491 2.3e-08 64.3 196 31.1
vmacro10391 Vaccinium macrocarpon HOM05D002211 ORTHO05D002206 2.3e-08 64.3 116 35.3
CSS0031414 Camellia sinensis var. sinensis HOM05D000664 ORTHO05D000491 3.0e-08 63.9 111 39.6
ClCG01G004670 Citrullus lanatus HOM05D000664 ORTHO05D000491 3.0e-08 63.9 185 25.9
Gohir.A12G196800 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.0e-08 63.9 172 30.8
HanXRQChr16g0525211 Helianthus annuus HOM05D000664 ORTHO05D000491 4.0e-08 63.5 169 26.0
Lsat_1_v5_gn_9_51501 Lactuca sativa HOM05D000664 ORTHO05D000491 4.0e-08 63.5 166 29.5
Rhsim01G0014600 Rhododendron simsii HOM05D000664 ORTHO05D000491 5.2e-08 63.2 130 30.0
Nn8g41009 Nelumbo nucifera HOM05D000664 ORTHO05D000491 6.7e-08 62.8 139 29.5
HanXRQChr06g0171101 Helianthus annuus HOM05D000664 ORTHO05D000491 8.8e-08 62.4 179 28.5
RcHm_v2.0_Chr4g0388641 Rosa chinensis HOM05D000664 ORTHO05D000491 8.8e-08 62.4 100 38.0
Lsat_1_v5_gn_3_40560 Lactuca sativa HOM05D000664 ORTHO05D000491 1.2e-07 62.0 159 27.7
PSO782G0631 Papaver somniferum HOM05D000664 ORTHO05D000491 1.2e-07 62.0 140 31.4
AUR62041427 Chenopodium quinoa HOM05D000664 ORTHO05D000491 1.5e-07 61.6 177 27.1
FvH4_6g52871 Fragaria vesca HOM05D000664 ORTHO05D000491 1.5e-07 61.6 71 38.0
GSVIVG01017506001 Vitis vinifera HOM05D000664 ORTHO05D000491 1.5e-07 61.6 164 28.7
Lsat_1_v5_gn_9_51601 Lactuca sativa HOM05D000664 ORTHO05D000491 2.0e-07 61.2 194 27.8
Lj7P466T32 Lonicera japonica HOM05D000664 ORTHO05D000491 2.0e-07 61.2 99 33.3
Nitab4.5_0006561g0070 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.0e-07 61.2 181 28.7
Atru.chr1.895 Acer truncatum HOM05D000664 ORTHO05D000491 3.3e-07 60.5 171 26.9
HanXRQChr16g0525201 Helianthus annuus HOM05D000664 ORTHO05D000491 3.3e-07 60.5 172 30.2
PSO170G0618 Papaver somniferum HOM05D000664 ORTHO05D000491 3.3e-07 60.5 176 26.1
Actinidia13606 Actinidia chinensis HOM05D000664 ORTHO05D000491 4.4e-07 60.1 164 28.0
Sed0002650 Sechium edule HOM05D000664 ORTHO05D000491 4.4e-07 60.1 180 23.9
COL.COLO4_37368 Corchorus olitorius HOM05D000664 ORTHO05D000491 5.7e-07 59.7 133 34.6
Nn8g41008 Nelumbo nucifera HOM05D000664 ORTHO05D000491 7.5e-07 59.3 171 29.8
Rhsim01G0016700 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.5e-07 59.3 50 64.0
FAN14G4417 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.7e-07 58.9 55 49.1
Potri.010G254000 Populus trichocarpa HOM05D000664 ORTHO05D000491 9.7e-07 58.9 190 27.9
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 9.7e-07 58.9 166 30.1
Thecc.05G238100 Theobroma cacao HOM05D000664 ORTHO05D000491 9.7e-07 58.9 143 30.1
COL.COLO4_37349 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.3e-06 58.5 111 35.1
PSO170G1152 Papaver somniferum HOM05D000664 ORTHO05D000491 1.3e-06 58.5 200 25.5
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.3e-06 58.5 63 49.2
Thecc.07G025800 Theobroma cacao HOM05D000664 ORTHO05D000491 1.3e-06 58.5 56 50.0
FvH4_6g31150 Fragaria vesca HOM05D000664 ORTHO05D000491 1.7e-06 58.2 53 49.1
Rhsim03G0162100 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.7e-06 58.2 170 29.4
TAR626G0460 Trochodendron aralioides HOM05D000664 ORTHO05D000491 1.7e-06 58.2 76 36.8
EL10Ac5g12381 Beta vulgaris HOM05D000664 ORTHO05D000491 2.2e-06 57.8 171 24.6
FvH4_1g12890 Fragaria vesca HOM05D000664 ORTHO05D000491 2.2e-06 57.8 72 43.1
ECA238G1559 Erigeron canadensis HOM05D000664 ORTHO05D000491 2.8e-06 57.4 166 27.1
Lj8C33T14 Lonicera japonica HOM05D000664 ORTHO05D000491 2.8e-06 57.4 90 33.3
Nitab4.5_0002322g0160 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.8e-06 57.4 185 26.5
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.8e-06 57.4 175 29.7
RcHm_v2.0_Chr4g0388661 Rosa chinensis HOM05D000664 ORTHO05D000491 2.8e-06 57.4 88 35.2
RcHm_v2.0_Chr4g0388801 Rosa chinensis HOM05D000664 ORTHO05D000491 2.8e-06 57.4 88 35.2
PGSC0003DMG400029956 Solanum tuberosum HOM05D000664 ORTHO05D000491 2.8e-06 57.4 125 32.8
FAN09G2913 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.7e-06 57.0 135 28.1
PSO063G1615 Papaver somniferum HOM05D000664 ORTHO05D000491 4.8e-06 56.6 182 26.4
Actinidia38737 Actinidia chinensis HOM05D000664 ORTHO05D000491 6.3e-06 56.2 82 37.8
Ciclev10005097m.g Citrus clementina HOM05D000664 ORTHO05D000491 6.3e-06 56.2 211 23.2
COL.COLO4_37351 Corchorus olitorius HOM05D000664 ORTHO05D000491 6.3e-06 56.2 196 25.5
FvH4_6g52880 Fragaria vesca HOM05D000664 ORTHO05D000491 6.3e-06 56.2 84 36.9
FAN14G0754 Fragaria x ananassa HOM05D000664 ORTHO05D000491 6.3e-06 56.2 84 36.9
Rhsim01G0014500 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.3e-06 56.2 72 41.7
Aqoxy7G02711 Aquilegia oxysepala HOM05D000664 ORTHO05D000491 8.2e-06 55.8 151 25.8
Duzib205G1254 Durio zibethinus HOM05D000664 ORTHO05D000491 8.2e-06 55.8 56 53.6
FAN14G3142 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.2e-06 55.8 163 28.2
Hma1.2p1_1045F.1_g251330 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 8.2e-06 55.8 176 26.1
Hma1.2p1_1404F.1_g281320 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 8.2e-06 55.8 83 36.1
Nitab4.5_0013676g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 8.2e-06 55.8 170 23.5
Rhsim01G0016600 Rhododendron simsii HOM05D000664 ORTHO05D000491 8.2e-06 55.8 82 36.6
Thecc.03G149600 Theobroma cacao HOM05D000664 ORTHO05D000491 8.2e-06 55.8 90 36.7
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 8.2e-06 55.8 168 25.6


User provided reference genes

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