Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.4e-252 875.9 468 100.0
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 5.9e-208 727.6 466 81.3
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 6.4e-194 681.0 452 78.5
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.1e-185 651.7 434 78.3
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.6e-176 621.7 474 69.0
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.0e-175 619.0 461 70.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.5e-174 615.9 533 66.4
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 2.4e-172 609.4 481 67.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 9.9e-171 604.0 467 67.5
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.1e-166 590.5 472 66.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 5.6e-166 588.2 464 66.6
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.8e-165 585.9 469 65.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 2.8e-165 585.9 473 64.9
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 7.6e-163 577.8 464 67.2
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 9.3e-161 570.9 472 62.9
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.2e-160 570.5 469 64.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.1e-160 569.7 470 62.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 3.5e-160 568.9 465 61.9
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 3.5e-160 568.9 463 63.9
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 2.3e-159 566.2 455 65.5
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 4.3e-158 562.0 472 64.0
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 4.3e-158 562.0 472 62.1
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.6e-157 560.1 459 61.9
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 3.7e-157 558.9 469 62.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 3.1e-156 555.8 469 62.0
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 9.0e-156 554.3 466 62.2
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.2e-155 553.9 464 63.8
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.2e-155 553.9 472 62.7
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.4e-155 552.4 457 62.4
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.0e-154 550.8 469 61.6
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 6.0e-152 541.6 463 61.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.0e-151 540.8 470 61.1
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.0e-151 540.8 471 61.8
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 3.0e-151 539.3 471 59.7
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 6.7e-151 538.1 381 73.0
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.1e-150 537.3 469 59.3
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.5e-150 537.0 471 59.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.5e-150 536.2 469 59.1
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.3e-150 535.8 464 60.1
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.3e-149 533.9 473 61.9
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.3e-149 533.9 473 61.5
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.1e-148 530.8 470 58.7
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.4e-148 530.4 471 59.4
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.8e-148 530.0 470 59.6
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.4e-148 529.6 467 59.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.5e-147 526.9 469 61.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.2e-145 519.2 465 59.4
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 4.2e-145 518.8 472 60.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 7.1e-145 518.1 430 63.5
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.2e-144 517.3 468 59.2
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.7e-144 516.2 466 59.4
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 7.9e-144 514.6 463 59.0
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.0e-143 514.2 693 46.3
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.7e-143 511.5 473 57.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.5e-142 509.6 464 57.8
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 2.5e-142 509.6 410 65.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 5.7e-142 508.4 464 57.8
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 7.4e-142 508.1 465 58.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.2e-141 506.5 464 57.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.2e-141 506.5 464 58.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.2e-141 506.5 464 57.8
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.2e-141 506.5 470 57.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.7e-141 505.8 471 59.4
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.2e-141 504.6 470 58.1
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 6.9e-140 501.5 476 58.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 2.9e-138 496.1 470 57.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.2e-137 492.3 503 55.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.1e-136 490.0 465 57.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.0e-135 487.6 466 56.9
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.5e-134 483.8 466 55.8
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.7e-133 480.3 394 62.9
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.8e-133 478.8 376 63.6
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.5e-131 473.8 470 58.1
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.8e-130 469.2 465 56.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 8.5e-130 468.0 464 56.7
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-127 460.3 429 58.7
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.5e-126 457.2 432 56.7
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.0e-126 456.8 549 47.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.1e-124 451.1 396 59.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.2e-122 443.4 370 63.5
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.9e-119 432.6 411 57.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.7e-117 427.2 431 54.3
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.8e-117 426.4 445 55.1
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 7.0e-116 421.8 387 60.2
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 3.5e-115 419.5 394 56.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 5.9e-115 418.7 322 67.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.0e-111 407.9 469 49.7
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 3.0e-111 406.4 419 55.1
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.4e-110 402.5 511 50.7
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.2e-109 400.2 290 67.6
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.5e-106 388.7 492 47.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-105 387.1 373 57.1
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.6e-104 382.9 355 56.3
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 4.7e-104 382.5 350 59.7
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.0e-103 381.3 488 45.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.0e-103 379.4 465 48.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.5e-102 377.5 291 66.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.7e-102 375.6 411 51.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 3.1e-100 369.8 275 69.5
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.0e-95 352.8 294 61.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.0e-94 350.5 490 44.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-91 340.5 264 66.3
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.0e-90 338.2 333 54.4
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.7e-90 337.4 254 68.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-90 336.7 320 57.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.5e-86 324.3 436 51.6
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 4.1e-84 316.2 475 42.1
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.0e-82 311.6 382 48.4
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 6.6e-82 308.9 228 65.4
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 5.2e-79 299.3 317 53.9
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.3e-77 294.7 527 40.4
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 4.6e-75 286.2 242 62.0
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.2e-70 271.6 446 39.7
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-67 261.2 307 51.1
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.3e-65 252.3 169 70.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 9.3e-60 235.3 304 47.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.2e-53 214.2 211 57.8
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.0e-46 191.0 159 62.3
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-44 184.5 176 56.8
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 4.2e-44 183.3 433 32.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.8e-39 167.9 107 72.9
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.4e-36 158.3 355 34.1
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.5e-36 157.5 150 56.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 2.1e-32 144.4 364 31.6
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-29 134.4 162 51.2
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 6.7e-26 122.9 151 49.0
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.7e-25 119.0 142 49.3
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 9.7e-25 119.0 132 51.5
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.0e-23 112.5 66 84.8
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 7.7e-22 109.4 123 52.8
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.4e-18 98.6 84 61.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.1e-18 96.7 125 43.2
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 5.1e-18 96.7 127 43.3
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.7e-16 90.5 75 60.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.7e-16 90.5 75 60.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.2e-16 89.4 75 58.7
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 2.4e-15 87.8 81 55.6
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.9e-15 86.3 75 58.7
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.7e-13 81.6 85 50.6
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.2e-12 77.0 102 47.1
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.0e-10 72.4 54 64.8
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-07 61.2 47 57.4
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.3e-07 60.1 46 65.2
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 2.0e-06 58.2 32 81.2


User provided reference genes

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