Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0037900 Rhododendron simsii HOM05D005907 ORTHO05D007033 8.8e-99 363.6 183 100.0
vmacro00100 Vaccinium macrocarpon HOM05D005907 ORTHO05D007033 1.6e-76 289.7 184 83.2
Actinidia01244 Actinidia chinensis HOM05D005907 ORTHO05D007033 2.0e-63 246.1 183 66.7
CSS0017808 Camellia sinensis var. sinensis HOM05D005907 ORTHO05D007033 3.2e-56 222.2 181 61.9
CiPaw.11G074000 Carya illinoinensis HOM05D005907 ORTHO05D007033 3.0e-54 215.7 182 59.3
Cfa012308 Carpinus fangiana HOM05D005907 ORTHO05D007033 1.1e-53 213.8 182 59.9
GSVIVG01036890001 Vitis vinifera HOM05D005907 ORTHO05D007033 5.8e-50 201.4 181 52.5
Lj3A1053G42 Lonicera japonica HOM05D005907 ORTHO05D007033 6.4e-49 198.0 165 59.4
TAR636G1547 Trochodendron aralioides HOM05D005907 ORTHO05D007033 5.4e-48 194.9 186 54.3
Atru.chr8.2614 Acer truncatum HOM05D005907 ORTHO05D007033 1.0e-46 190.7 173 54.3
Migut.A00472 Erythranthe guttata HOM05D005907 ORTHO05D007033 1.0e-46 190.7 179 49.2
Oeu046770.1 Olea europaea HOM05D005907 ORTHO05D007033 2.3e-46 189.5 186 52.7
Cc08_g05990 Coffea canephora HOM05D005907 ORTHO05D007033 6.6e-46 188.0 183 51.4
RcHm_v2.0_Chr7g0215261 Rosa chinensis HOM05D005907 ORTHO05D007033 6.6e-46 188.0 178 51.7
Ciclev10012886m.g Citrus clementina HOM05D005907 ORTHO05D007033 1.5e-45 186.8 183 51.4
Oeu047809.2 Olea europaea HOM05D005907 ORTHO05D007033 9.6e-45 184.1 183 48.1
MSTRG.25750 Avicennia marina HOM05D005907 ORTHO05D007033 1.2e-44 183.7 181 49.2
Duzib205G2043 Durio zibethinus HOM05D005907 ORTHO05D007033 1.2e-44 183.7 177 51.4
FAN04G3107 Fragaria x ananassa HOM05D005907 ORTHO05D007033 2.8e-44 182.6 178 50.6
Lalb_Chr05g0215181 Lupinus albus HOM05D005907 ORTHO05D007033 2.8e-44 182.6 170 51.8
FvH4_5g24980 Fragaria vesca HOM05D005907 ORTHO05D007033 3.6e-44 182.2 175 52.0
FAN18G3850 Fragaria x ananassa HOM05D005907 ORTHO05D007033 3.6e-44 182.2 175 52.0
Medtr5g025640 Medicago truncatula HOM05D005907 ORTHO05D007033 6.2e-44 181.4 173 48.6
Prupe.5G013600 Prunus persica HOM05D005907 ORTHO05D007033 6.2e-44 181.4 190 47.4
Lj2g0019236 Lotus japonicus HOM05D005907 ORTHO05D007033 3.1e-43 179.1 172 48.8
PGR031G0343 Punica granatum HOM05D005907 ORTHO05D007033 3.1e-43 179.1 178 48.9
Glyma.01G153000 Glycine max HOM05D005907 ORTHO05D007033 5.2e-43 178.3 175 49.7
Lalb_Chr09g0325061 Lupinus albus HOM05D005907 ORTHO05D007033 5.2e-43 178.3 172 51.7
FAN08G1334 Fragaria x ananassa HOM05D005907 ORTHO05D007033 1.2e-42 177.2 178 50.0
TPR.G8986 Trifolium pratense HOM05D005907 ORTHO05D007033 1.5e-42 176.8 173 50.3
Nn1g09337 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.0e-42 176.4 176 52.3
TWI60G0533 Tripterygium wilfordii HOM05D005907 ORTHO05D007033 2.0e-42 176.4 182 48.4
Potri.004G235000 Populus trichocarpa HOM05D005907 ORTHO05D007033 2.6e-42 176.0 173 52.0
Peaxi162Scf00876g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 3.4e-42 175.6 173 50.9
COL.COLO4_16745 Corchorus olitorius HOM05D005907 ORTHO05D007033 5.8e-42 174.9 179 50.3
VMungo1215G2629 Vigna mungo HOM05D001324 ORTHO05D001220 7.6e-42 174.5 174 49.4
arahy.Tifrunner.gnm1.ann1.4G5U2W Arachis hypogaea HOM05D005907 ORTHO05D007033 9.9e-42 174.1 174 50.0
arahy.Tifrunner.gnm1.ann1.Y9HS7A Arachis hypogaea HOM05D005907 ORTHO05D007033 9.9e-42 174.1 174 50.0
Glyma.09G218300 Glycine max HOM05D005907 ORTHO05D007033 1.3e-41 173.7 175 49.1
TAR629G0350 Trochodendron aralioides HOM05D005907 ORTHO05D007033 2.2e-41 172.9 171 52.6
MD06G1011300 Malus domestica HOM05D005907 ORTHO05D007033 6.4e-41 171.4 190 43.7
Thecc.03G320600 Theobroma cacao HOM05D005907 ORTHO05D007033 6.4e-41 171.4 177 49.7
Lalb_Chr16g0380441 Lupinus albus HOM05D005907 ORTHO05D007033 1.1e-40 170.6 176 48.3
Psat2g145040 Pisum sativum HOM05D005907 ORTHO05D007033 1.4e-40 170.2 173 48.6
Phvul.002G122500 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 1.9e-40 169.9 161 49.7
CAN.G998.7 Capsicum annuum HOM05D005907 ORTHO05D007033 3.2e-40 169.1 174 48.9
Nitab4.5_0000986g0090 Nicotiana tabacum HOM05D005907 ORTHO05D007033 3.2e-40 169.1 170 51.2
Sed0007709 Sechium edule HOM05D005907 ORTHO05D007033 5.4e-40 168.3 171 46.8
Solyc08g075290.2 Solanum lycopersicum HOM05D005907 ORTHO05D007033 7.1e-40 167.9 170 48.2
Sopen08g023890 Solanum pennellii HOM05D005907 ORTHO05D007033 7.1e-40 167.9 172 47.1
Hund14310 Selenicereus undatus HOM05D005907 ORTHO05D007033 1.2e-39 167.2 170 48.2
Nn3g19120 Nelumbo nucifera HOM05D005907 ORTHO05D007033 2.7e-39 166.0 172 50.0
Gohir.D12G203800 Gossypium hirsutum HOM05D005907 ORTHO05D007033 3.5e-39 165.6 181 47.0
Manes.17G003749 Manihot esculenta HOM05D005907 ORTHO05D007033 3.5e-39 165.6 182 44.0
CANSAT35G1964 Cannabis sativa HOM05D005907 ORTHO05D007033 6.0e-39 164.9 180 48.3
ClCG07G011130 Citrullus lanatus HOM05D005907 ORTHO05D007033 1.3e-38 163.7 166 47.6
Gorai.008G218600 Gossypium raimondii HOM05D005907 ORTHO05D007033 1.7e-38 163.3 181 45.9
SalBow4G0438 Salvia bowleyana HOM05D005907 ORTHO05D007033 2.3e-38 162.9 166 49.4
Gohir.A12G201000 Gossypium hirsutum HOM05D005907 ORTHO05D007033 5.1e-38 161.8 179 46.9
PSO339G2078 Papaver somniferum HOM05D005907 ORTHO05D007033 5.1e-38 161.8 154 54.5
Eucgr.E01152 Eucalyptus grandis HOM05D005907 ORTHO05D007033 6.6e-38 161.4 172 42.4
CsaV3_4G007120 Cucumis sativus L. HOM05D005907 ORTHO05D007033 3.3e-37 159.1 155 47.7
PGR042G1103 Punica granatum HOM05D005907 ORTHO05D007033 3.3e-37 159.1 168 51.2
Sed0019955 Sechium edule HOM05D005907 ORTHO05D007033 3.3e-37 159.1 168 46.4
Gorai.004G176900 Gossypium raimondii HOM05D005907 ORTHO05D007033 9.6e-37 157.5 178 45.5
Medtr8g072220 Medicago truncatula HOM05D005907 ORTHO05D007033 9.6e-37 157.5 166 45.2
Dinv37434 Davidia involucrata HOM05D005907 ORTHO05D007033 2.1e-36 156.4 124 61.3
SalBow8G0159 Salvia bowleyana HOM05D005907 ORTHO05D007033 2.1e-36 156.4 182 46.2
Duzib068G0478 Durio zibethinus HOM05D005907 ORTHO05D007033 2.8e-36 156.0 182 46.7
Gohir.D08G169700 Gossypium hirsutum HOM05D005907 ORTHO05D007033 1.1e-35 154.1 178 46.1
Manes.15G184500 Manihot esculenta HOM05D005907 ORTHO05D007033 1.1e-35 154.1 144 49.3
Sp1g27370 Schrenkiella parvula HOM05D005907 ORTHO05D007033 1.4e-35 153.7 153 47.1
Gohir.A08G148600 Gossypium hirsutum HOM05D005907 ORTHO05D007033 4.0e-35 152.1 179 45.8
Glyma.16G076400 Glycine max HOM05D005907 ORTHO05D007033 9.0e-35 151.0 176 46.6
SGA_v2.0_scaffold121G33056 Striga asiatica HOM05D005907 ORTHO05D007033 9.0e-35 151.0 183 41.5
Nitab4.5_0006244g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 5.8e-34 148.3 164 48.8
BcaB04g18131 Brassica carinata HOM05D005907 ORTHO05D007033 1.7e-33 146.7 149 45.0
THA.LOC104814387 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 2.9e-33 146.0 179 38.5
A08p10440 Brassica napus HOM05D005907 ORTHO05D007033 1.1e-32 144.1 167 43.7
Carub.0001s3002 Capsella rubella HOM05D005907 ORTHO05D007033 1.1e-32 144.1 153 43.1
VMungo0251G3198 Vigna mungo HOM05D005907 ORTHO05D007033 2.4e-32 142.9 166 44.6
BcaC07g37737 Brassica carinata HOM05D005907 ORTHO05D007033 3.2e-32 142.5 166 42.2
BolC8t48118H Brassica oleracea HOM05D005907 ORTHO05D007033 3.2e-32 142.5 166 42.2
Aa31LG2G14390 Aethionema arabicum HOM05D005907 ORTHO05D007033 4.2e-32 142.1 156 44.9
Thhalv10008873m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 4.2e-32 142.1 153 43.1
AL1G45790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 9.3e-32 141.0 173 41.6
CARHR031020 Cardamine hirsuta HOM05D005907 ORTHO05D007033 1.2e-31 140.6 154 43.5
HanXRQChr08g0233691 Helianthus annuus HOM05D005907 ORTHO05D007033 1.0e-30 137.5 182 41.8
BraA08t33042Z Brassica rapa HOM05D005907 ORTHO05D007033 1.3e-30 137.1 174 42.0
Phvul.003G278300 Phaseolus vulgaris HOM05D005907 ORTHO05D007033 6.7e-30 134.8 144 47.9
Sp4g03880 Schrenkiella parvula HOM05D005907 ORTHO05D007033 8.7e-30 134.4 153 41.8
ATR0568G210 Amborella trichopoda HOM05D005907 ORTHO05D007033 1.1e-29 134.0 161 43.5
BcaNung01784 Brassica carinata HOM05D005907 ORTHO05D007033 4.3e-29 132.1 151 41.7
THA.LOC104806200 Tarenaya hassleriana HOM05D005907 ORTHO05D007033 5.6e-29 131.7 162 40.1
Thhalv10026210m.g Eutrema salsugineum HOM05D005907 ORTHO05D007033 7.4e-29 131.3 150 40.7
AL7G34790 Arabidopsis lyrata HOM05D005907 ORTHO05D007033 9.6e-29 131.0 161 39.8
EL10Ac5g12591 Beta vulgaris HOM05D005907 ORTHO05D007033 9.6e-29 131.0 178 43.3
A01p11320 Brassica napus HOM05D005907 ORTHO05D007033 1.3e-28 130.6 169 36.7
BraA01t01076Z Brassica rapa HOM05D005907 ORTHO05D007033 1.3e-28 130.6 169 36.7
BcaC09g51418 Brassica carinata HOM05D005907 ORTHO05D007033 1.6e-28 130.2 169 36.7
C01p13330 Brassica napus HOM05D005907 ORTHO05D007033 1.6e-28 130.2 169 36.7
BolC1t01308H Brassica oleracea HOM05D005907 ORTHO05D007033 1.6e-28 130.2 169 36.7
AT4G19370 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 2.8e-28 129.4 158 39.2
CDE01G0013 Ceratophyllum demersum HOM05D005907 ORTHO05D007033 2.8e-28 129.4 157 43.9
Sc07g0008040 Simmondsia chinensis HOM05D005907 ORTHO05D007033 3.7e-28 129.0 114 51.8
Carub.0007s2186 Capsella rubella HOM05D005907 ORTHO05D007033 6.2e-28 128.3 161 38.5
Sp7g17980 Schrenkiella parvula HOM05D005907 ORTHO05D007033 8.1e-28 127.9 154 39.6
AT1G31720 Arabidopsis thaliana HOM05D005907 ORTHO05D007033 1.1e-27 127.5 128 47.7
Aa31LG6G1970 Aethionema arabicum HOM05D005907 ORTHO05D007033 1.8e-27 126.7 172 39.0
ECA233G3754 Erigeron canadensis HOM05D005907 ORTHO05D007033 6.9e-27 124.8 161 41.0
CARHR226160 Cardamine hirsuta HOM05D005907 ORTHO05D007033 9.0e-27 124.4 150 38.7
Sed0021253 Sechium edule HOM05D005907 ORTHO05D007033 1.2e-26 124.0 125 48.8
unitig_37.g12906 Utricularia gibba HOM05D005907 ORTHO05D007033 7.6e-26 121.3 153 39.9
Psat4g109120 Pisum sativum HOM05D005907 ORTHO05D007033 2.7e-23 112.8 128 45.3
Cpa.g.c30909 Carica papaya HOM05D005907 ORTHO05D007033 7.9e-23 111.3 134 42.5
Peaxi162Scf00550g00429 Petunia axillaris HOM05D005907 ORTHO05D007033 1.3e-22 110.5 106 48.1
Haze_08421 Corylus avellana HOM05D005907 ORTHO05D007033 1.8e-22 110.2 106 55.7
Haze_08422 Corylus avellana HOM05D005907 ORTHO05D007033 3.9e-22 109.0 91 59.3
Zm00001eb251950 Zea mays HOM05D005907 ORTHO05D007033 5.1e-22 108.6 130 43.1
Os02g0703300 Oryza sativa ssp. japonica HOM05D005907 ORTHO05D007033 1.1e-21 107.5 133 37.6
SEGI_15207 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 3.4e-18 95.9 161 32.3
Nitab4.5_0009213g0030 Nicotiana tabacum HOM05D005907 ORTHO05D007033 5.8e-18 95.1 77 59.7
ClCG11G016120 Citrullus lanatus HOM05D005907 ORTHO05D007033 2.1e-15 86.7 106 43.4
Aqoxy2G03476 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 3.5e-15 85.9 96 44.8
Nitab4.5_0000943g0070 Nicotiana tabacum HOM05D005907 ORTHO05D007033 6.7e-14 81.6 95 46.3
SEGI_02785 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 6.7e-14 81.6 138 35.5
ClCG11G016110 Citrullus lanatus HOM05D005907 ORTHO05D007033 8.7e-14 81.3 67 53.7
arahy.Tifrunner.gnm1.ann1.93DHY7 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.3e-12 77.4 62 56.5
SEGI_02210 Sequoiadendron giganteum HOM05D002819 ORTHO05D003207 8.2e-12 74.7 167 30.5
arahy.Tifrunner.gnm1.ann1.UI3LS8 Arachis hypogaea HOM05D005907 ORTHO05D007033 1.8e-11 73.6 96 40.6
arahy.Tifrunner.gnm1.ann1.VB8HUC Arachis hypogaea HOM05D005907 ORTHO05D007033 1.2e-10 70.9 100 40.0
PGSC0003DMG400001952 Solanum tuberosum HOM05D005907 ORTHO05D007033 7.7e-10 68.2 66 45.5
CiPaw.06G020000 Carya illinoinensis HOM05D002819 ORTHO05D003207 1.0e-09 67.8 150 30.7
Lsat_1_v5_gn_6_17141 Lactuca sativa HOM05D005907 ORTHO05D007033 1.7e-09 67.0 116 37.1
SMO201G0204 Selaginella moellendorffii HOM05D002819 ORTHO05D003207 1.7e-09 67.0 163 30.1
MELO3C016217.2 Cucumis melo HOM05D005907 ORTHO05D007033 2.2e-09 66.6 58 55.2
Eucgr.G01794 Eucalyptus grandis HOM05D002819 ORTHO05D003207 6.5e-09 65.1 164 32.3
Sabra01G0179700 Salix brachista HOM05D005907 ORTHO05D007033 1.1e-08 64.3 69 49.3
Actinidia18697 Actinidia chinensis HOM05D002819 ORTHO05D003207 1.9e-08 63.5 151 29.8
PGR031G0062 Punica granatum HOM05D002819 ORTHO05D003207 4.2e-08 62.4 143 31.5
Eucgr.K00096 Eucalyptus grandis HOM05D002819 ORTHO05D003207 5.5e-08 62.0 163 30.7
DCAR_014571 Daucus carota HOM05D002819 ORTHO05D003207 9.4e-08 61.2 149 30.2
Eucgr.K00098 Eucalyptus grandis HOM05D002819 ORTHO05D003207 9.4e-08 61.2 167 31.7
Eucgr.L02108 Eucalyptus grandis HOM05D002819 ORTHO05D003207 1.2e-07 60.8 167 31.7
Mapoly0007s0269 Marchantia polymorpha HOM05D002819 ORTHO05D003207 6.1e-07 58.5 159 32.1
Os05g0434800 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 7.9e-07 58.2 179 29.1
Os05g0434600 Oryza sativa ssp. japonica HOM05D002819 ORTHO05D003207 1.0e-06 57.8 179 28.5
Glyma.07G186800 Glycine max HOM05D001850 ORTHO05D002241 1.4e-06 57.4 115 30.4
vmacro06495 Vaccinium macrocarpon HOM05D002819 ORTHO05D003207 1.8e-06 57.0 139 35.3
Aqoxy2G03475 Aquilegia oxysepala HOM05D005907 ORTHO05D007033 2.3e-06 56.6 48 54.2
TAR629G2358 Trochodendron aralioides HOM05D002819 ORTHO05D003207 2.3e-06 56.6 149 27.5
Lalb_Chr19g0139871 Lupinus albus HOM05D002819 ORTHO05D003207 3.0e-06 56.2 161 28.0
CSS0046349 Camellia sinensis var. sinensis HOM05D002819 ORTHO05D003207 6.7e-06 55.1 148 28.4
Psat7g105440 Pisum sativum HOM05D001850 ORTHO05D002241 6.7e-06 55.1 118 27.1


User provided reference genes

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