Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 5.0e-207 724.9 567 100.0
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 4.9e-178 628.6 522 73.4
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 3.4e-155 552.7 316 86.7
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.7e-154 550.4 370 78.6
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 6.2e-141 505.4 310 80.0
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 5.2e-140 502.3 316 80.7
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.2e-139 501.1 315 78.4
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 4.9e-138 495.7 316 79.4
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 3.2e-137 493.0 317 78.2
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 4.2e-137 492.7 318 78.0
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 5.4e-137 492.3 315 78.4
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 3.0e-135 486.5 314 78.0
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 3.9e-135 486.1 311 78.1
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.1e-134 484.6 316 78.2
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 2.5e-134 483.4 320 76.6
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 3.6e-133 479.6 309 78.6
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 8.1e-133 478.4 312 78.2
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 8.1e-133 478.4 310 76.8
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 1.4e-132 477.6 313 79.2
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.4e-132 477.6 321 76.0
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.8e-132 477.2 308 77.6
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 3.1e-132 476.5 309 78.3
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.1e-132 476.5 321 76.0
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 4.0e-132 476.1 313 77.3
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 6.9e-132 475.3 321 76.0
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 9.0e-132 474.9 315 75.9
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 9.0e-132 474.9 315 75.9
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 1.2e-131 474.6 315 77.1
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 1.5e-131 474.2 352 70.5
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.0e-131 473.8 316 75.9
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 2.0e-131 473.8 312 76.3
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 3.4e-131 473.0 316 76.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 5.8e-131 472.2 323 75.2
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 7.6e-131 471.9 321 75.7
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 9.9e-131 471.5 308 76.9
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 1.3e-130 471.1 316 75.9
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 1.7e-130 470.7 315 75.9
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 2.2e-130 470.3 310 76.5
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 6.4e-130 468.8 315 75.6
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 8.4e-130 468.4 314 74.5
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 1.4e-129 467.6 312 73.7
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.4e-129 467.6 316 74.4
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 1.9e-129 467.2 313 76.7
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 5.4e-129 465.7 310 76.8
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 9.3e-129 464.9 312 74.0
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 9.3e-129 464.9 315 74.6
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 1.6e-128 464.2 309 76.1
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 2.1e-128 463.8 316 74.1
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.7e-128 463.4 312 74.4
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 3.5e-128 463.0 316 75.6
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 6.0e-128 462.2 304 76.3
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 1.0e-127 461.5 327 72.8
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.0e-127 461.5 308 76.3
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 6.7e-127 458.8 318 73.6
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 8.7e-127 458.4 306 73.9
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 8.7e-127 458.4 312 72.8
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 1.9e-126 457.2 311 74.3
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 2.5e-126 456.8 312 73.1
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 3.3e-126 456.4 309 75.4
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 3.3e-126 456.4 307 74.6
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 7.4e-126 455.3 317 73.2
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 7.4e-126 455.3 314 73.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 7.4e-126 455.3 316 73.1
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.6e-125 454.1 310 75.5
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 1.6e-125 454.1 313 72.8
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 2.1e-125 453.8 335 71.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 3.7e-125 453.0 314 72.3
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 3.7e-125 453.0 314 72.3
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 3.7e-125 453.0 304 75.3
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 4.8e-125 452.6 314 72.3
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 8.1e-125 451.8 314 73.2
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 8.1e-125 451.8 315 72.7
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.4e-124 451.1 316 72.8
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.0e-123 447.2 316 71.8
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.8e-122 443.0 342 69.3
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 4.9e-122 442.6 305 74.1
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 8.4e-122 441.8 314 71.0
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.4e-121 441.0 327 71.9
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 4.2e-121 439.5 333 67.3
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 1.9e-118 430.6 314 70.7
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.6e-117 427.6 313 70.6
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 2.1e-117 427.2 294 73.1
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.1e-116 424.9 315 69.2
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 1.0e-114 418.3 384 60.4
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 3.8e-114 416.4 314 67.2
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 5.5e-113 412.5 315 69.2
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.7e-104 383.6 308 64.6
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 9.7e-102 375.2 264 71.6
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 2.8e-101 373.6 552 43.3
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 4.1e-100 369.8 254 75.6
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.5e-99 367.9 294 62.9
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.3e-98 364.8 279 69.2
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 3.2e-97 360.1 277 64.3
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 5.7e-94 349.4 231 77.9
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 3.0e-87 327.0 289 58.8
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 3.7e-85 320.1 220 74.1
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 1.5e-81 308.1 222 69.8
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.7e-72 277.3 305 53.1
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 4.1e-68 263.5 185 74.6
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 3.0e-63 247.3 183 68.9
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 8.6e-58 229.2 138 77.5
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 1.5e-49 201.8 150 68.7
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 1.2e-43 182.2 173 58.4
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 1.7e-42 178.3 267 39.0
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 2.4e-28 131.3 189 48.1
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 4.1e-28 130.6 97 72.2
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.6e-27 128.6 117 62.4
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 3.5e-27 127.5 69 82.6
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 1.3e-26 125.6 93 72.0
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 5.6e-25 120.2 88 71.6
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 8.4e-21 106.3 56 82.1
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 7.1e-20 103.2 115 53.9
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.1e-19 101.7 62 80.6
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.0e-18 99.4 62 79.0
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.1e-17 95.9 62 74.2
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 3.3e-17 94.4 50 86.0
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 3.3e-17 94.4 50 86.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.8e-16 91.3 62 77.4
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 7.6e-14 83.2 124 37.1
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 2.2e-13 81.6 42 90.5
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 3.8e-13 80.9 67 65.7
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 1.9e-12 78.6 45 75.6


User provided reference genes

Program Settings