Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0035300 Rhododendron simsii HOM05D002321 ORTHO05D007292 1.1e-133 479.9 234 100.0
Rhsim11G0035800 Rhododendron simsii HOM05D002321 ORTHO05D007292 3.3e-66 255.8 214 65.0
vmacro00081 Vaccinium macrocarpon HOM05D002321 ORTHO05D007292 9.0e-56 221.1 210 58.6
CSS0039841 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D007292 1.1e-53 214.2 214 54.7
Dinv41810 Davidia involucrata HOM05D002321 ORTHO05D007292 1.3e-51 207.2 214 53.3
CSS0026909 Camellia sinensis var. sinensis HOM05D002321 ORTHO05D007292 1.9e-50 203.4 214 52.3
Lj8A345G17 Lonicera japonica HOM05D002321 ORTHO05D007292 4.3e-50 202.2 216 50.0
DCAR_028365 Daucus carota HOM05D002321 ORTHO05D007292 3.4e-47 192.6 215 49.3
Thecc.03G318100 Theobroma cacao HOM05D002321 ORTHO05D007292 1.4e-45 187.2 205 48.8
Atru.chr8.2642 Acer truncatum HOM05D002321 ORTHO05D007292 1.9e-45 186.8 209 49.8
Atru.chr8.2639 Acer truncatum HOM05D002321 ORTHO05D007292 4.2e-45 185.7 209 49.8
TAR636G3608 Trochodendron aralioides HOM05D002321 ORTHO05D007292 5.5e-45 185.3 207 48.8
GSVIVG01020479001 Vitis vinifera HOM05D002321 ORTHO05D007292 1.6e-44 183.7 209 48.8
Gohir.D08G171000 Gossypium hirsutum HOM05D002321 ORTHO05D007292 4.6e-44 182.2 204 48.0
Cc08_g05450 Coffea canephora HOM05D002321 ORTHO05D007292 6.1e-44 181.8 207 48.3
Gohir.A08G149900 Gossypium hirsutum HOM05D002321 ORTHO05D007292 6.1e-44 181.8 204 47.5
Cfa020521 Carpinus fangiana HOM05D002321 ORTHO05D007292 7.9e-44 181.4 213 44.6
Duzib068G1479 Durio zibethinus HOM05D002321 ORTHO05D007292 7.9e-44 181.4 211 47.4
Potri.001G193300 Populus trichocarpa HOM05D002321 ORTHO05D007292 1.0e-43 181.0 209 47.4
Gorai.004G178400 Gossypium raimondii HOM05D002321 ORTHO05D007292 1.4e-43 180.6 204 47.5
SalBow4G2419 Salvia bowleyana HOM05D002321 ORTHO05D007292 1.8e-43 180.3 205 46.8
RcHm_v2.0_Chr6g0304441 Rosa chinensis HOM05D002321 ORTHO05D007292 2.3e-43 179.9 209 45.9
CiPaw.03G266200 Carya illinoinensis HOM05D002321 ORTHO05D007292 3.0e-43 179.5 220 45.9
Ciclev10012148m.g Citrus clementina HOM05D002321 ORTHO05D007292 3.9e-43 179.1 211 46.4
Nitab4.5_0009533g0010 Nicotiana tabacum HOM05D000433 ORTHO05D000443 5.1e-43 178.7 213 46.5
COL.COLO4_10363 Corchorus olitorius HOM05D002321 ORTHO05D007292 8.8e-43 177.9 210 45.7
Aa31LG9G15700 Aethionema arabicum HOM05D002321 ORTHO05D007292 1.1e-42 177.6 203 46.3
AT3G45890 Arabidopsis thaliana HOM05D002321 ORTHO05D007292 1.1e-42 177.6 203 47.3
Carub.0005s1174 Capsella rubella HOM05D002321 ORTHO05D007292 1.5e-42 177.2 203 47.3
CARHR154220 Cardamine hirsuta HOM05D002321 ORTHO05D007292 2.0e-42 176.8 203 46.8
Haze_09515 Corylus avellana HOM05D002321 ORTHO05D007292 2.6e-42 176.4 213 43.2
QL07p000071 Quercus lobata HOM05D002321 ORTHO05D007292 2.6e-42 176.4 213 45.1
CAN.G884.10 Capsicum annuum HOM05D002321 ORTHO05D007292 3.3e-42 176.0 205 46.8
Migut.A00536 Erythranthe guttata HOM05D002321 ORTHO05D007292 3.3e-42 176.0 205 45.4
Sp5g15650 Schrenkiella parvula HOM05D002321 ORTHO05D007292 3.3e-42 176.0 203 46.8
BcaB01g01050 Brassica carinata HOM05D002321 ORTHO05D007292 4.4e-42 175.6 203 47.3
Lj8A1G34 Lonicera japonica HOM05D002321 ORTHO05D007292 7.4e-42 174.9 204 47.5
Peaxi162Scf00045g00729 Petunia axillaris HOM05D002321 ORTHO05D007292 7.4e-42 174.9 207 45.9
BcaC01g01944 Brassica carinata HOM05D002321 ORTHO05D007292 9.7e-42 174.5 203 47.3
BolC3t19290H Brassica oleracea HOM05D002321 ORTHO05D007292 9.7e-42 174.5 203 47.3
Ca_25029_v3 Cicer arietinum L. HOM05D002321 ORTHO05D007292 1.3e-41 174.1 211 45.0
ECA240G2715 Erigeron canadensis HOM05D002321 ORTHO05D007292 1.3e-41 174.1 204 47.5
AL5G24570 Arabidopsis lyrata HOM05D002321 ORTHO05D007292 1.7e-41 173.7 203 46.3
PSO502G0020 Papaver somniferum HOM05D002321 ORTHO05D007292 1.7e-41 173.7 210 46.2
PSO675G6664 Papaver somniferum HOM05D002321 ORTHO05D007292 1.7e-41 173.7 210 46.2
PGSC0003DMG400018482 Solanum tuberosum HOM05D002321 ORTHO05D007292 1.7e-41 173.7 205 46.3
Rhsim11G0035000 Rhododendron simsii HOM05D002321 ORTHO05D007292 2.2e-41 173.3 170 59.4
Medtr5g025160 Medicago truncatula HOM05D002321 ORTHO05D007292 2.8e-41 172.9 215 43.7
Solyc08g005570.4 Solanum lycopersicum HOM05D002321 ORTHO05D007292 2.8e-41 172.9 205 46.3
C03p70360 Brassica napus HOM05D002321 ORTHO05D007292 3.7e-41 172.6 203 46.8
Manes.11G092600 Manihot esculenta HOM05D002321 ORTHO05D007292 3.7e-41 172.6 209 45.5
Sopen08g001590 Solanum pennellii HOM05D002321 ORTHO05D007292 3.7e-41 172.6 205 46.3
TPR.G5263 Trifolium pratense HOM05D002321 ORTHO05D007292 3.7e-41 172.6 206 44.2
Prupe.1G352800 Prunus persica HOM05D002321 ORTHO05D007292 4.8e-41 172.2 208 44.7
CDE02G1030 Ceratophyllum demersum HOM05D002321 ORTHO05D007292 1.1e-40 171.0 197 46.7
TWI32G0969 Tripterygium wilfordii HOM05D002321 ORTHO05D007292 1.1e-40 171.0 209 44.5
Aqoxy7G00905 Aquilegia oxysepala HOM05D002321 ORTHO05D007292 1.4e-40 170.6 204 45.6
Thhalv10002446m.g Eutrema salsugineum HOM05D002321 ORTHO05D007292 1.4e-40 170.6 201 47.3
Glyma.01G155200 Glycine max HOM05D002321 ORTHO05D007292 2.4e-40 169.9 205 45.9
FAN15G3131 Fragaria x ananassa HOM05D002321 ORTHO05D007292 3.1e-40 169.5 214 43.9
A06p21190 Brassica napus HOM05D002321 ORTHO05D007292 4.1e-40 169.1 200 47.0
QL05p088947 Quercus lobata HOM05D002321 ORTHO05D007292 4.1e-40 169.1 210 44.8
FAN20G1652 Fragaria x ananassa HOM05D002321 ORTHO05D007292 6.9e-40 168.3 214 43.5
HanXRQChr03g0081051 Helianthus annuus HOM05D002321 ORTHO05D007292 6.9e-40 168.3 204 47.5
Lalb_Chr16g0380301 Lupinus albus HOM05D002321 ORTHO05D007292 6.9e-40 168.3 214 44.4
THA.LOC104814396 Tarenaya hassleriana HOM05D002321 ORTHO05D007292 6.9e-40 168.3 206 44.2
ATR0568G152 Amborella trichopoda HOM05D002321 ORTHO05D007292 9.1e-40 167.9 202 47.0
Nitab4.5_0001175g0160 Nicotiana tabacum HOM05D002321 ORTHO05D007292 9.1e-40 167.9 204 44.6
Oeu015537.1 Olea europaea HOM05D002321 ORTHO05D007292 9.1e-40 167.9 206 44.7
Psat2g145920 Pisum sativum HOM05D002321 ORTHO05D007292 9.1e-40 167.9 206 43.2
SGA_v2.0_scaffold96G29090 Striga asiatica HOM05D002321 ORTHO05D007292 1.2e-39 167.5 206 43.7
CANSAT01G1510 Cannabis sativa HOM05D002321 ORTHO05D007292 1.5e-39 167.2 204 44.6
Actinidia32784 Actinidia chinensis HOM05D002321 ORTHO05D007292 2.0e-39 166.8 179 52.5
BraA06t25206Z Brassica rapa HOM05D002321 ORTHO05D007292 2.0e-39 166.8 200 46.5
Phvul.002G120300 Phaseolus vulgaris HOM05D002321 ORTHO05D007292 2.0e-39 166.8 210 44.3
PGR031G1597 Punica granatum HOM05D002321 ORTHO05D007292 2.0e-39 166.8 210 43.8
VMungo1215G0605 Vigna mungo HOM05D002321 ORTHO05D007292 2.0e-39 166.8 208 44.2
Lsat_1_v5_gn_5_56941 Lactuca sativa HOM05D002321 ORTHO05D007292 2.6e-39 166.4 198 48.0
Nn7g37396 Nelumbo nucifera HOM05D002321 ORTHO05D007292 5.9e-39 165.2 199 46.2
Eucgr.D02553 Eucalyptus grandis HOM05D002321 ORTHO05D007292 2.9e-38 162.9 210 42.9
arahy.Tifrunner.gnm1.ann1.MGL5WV Arachis hypogaea HOM05D002321 ORTHO05D007292 8.5e-38 161.4 197 44.2
arahy.Tifrunner.gnm1.ann1.RTC3FZ Arachis hypogaea HOM05D002321 ORTHO05D007292 8.5e-38 161.4 197 44.2
MD08G1000800 Malus domestica HOM05D002321 ORTHO05D007292 8.5e-38 161.4 204 43.6
Glyma.11G089500 Glycine max HOM05D002321 ORTHO05D007292 1.1e-37 161.0 207 44.4
Ah.10g034370 Amaranthus hybridus HOM05D002321 ORTHO05D007292 1.9e-37 160.2 208 40.4
Hund11035 Selenicereus undatus HOM05D002321 ORTHO05D007292 2.5e-37 159.8 210 41.0
AUR62010476 Chenopodium quinoa HOM05D002321 ORTHO05D007292 7.2e-37 158.3 199 43.7
Psat6g117280 Pisum sativum HOM05D002321 ORTHO05D007292 1.6e-36 157.1 206 40.8
Lj2g0006482 Lotus japonicus HOM05D002321 ORTHO05D007292 2.1e-36 156.8 213 41.8
Os04g0290800 Oryza sativa ssp. japonica HOM05D002321 ORTHO05D007292 1.4e-35 154.1 219 39.7
EL10Ac6g14612 Beta vulgaris HOM05D002321 ORTHO05D007292 2.3e-35 153.3 203 41.4
ClCG05G012170 Citrullus lanatus HOM05D002321 ORTHO05D007292 8.8e-35 151.4 197 42.1
Sc07g0007960 Simmondsia chinensis HOM05D002321 ORTHO05D007292 1.5e-34 150.6 202 40.6
CsaV3_3G020160 Cucumis sativus L. HOM05D002321 ORTHO05D007292 3.3e-34 149.4 198 41.9
Zm00001eb143370 Zea mays HOM05D002321 ORTHO05D007292 1.3e-33 147.5 207 38.6
MELO3C014739.2 Cucumis melo HOM05D002321 ORTHO05D007292 3.7e-33 146.0 211 39.8
unitig_32.g11634 Utricularia gibba HOM05D002321 ORTHO05D007292 2.2e-30 136.7 211 37.0
SHI07853 Sapria himalayana HOM05D002321 ORTHO05D007292 2.9e-30 136.3 198 39.9
Sed0006351 Sechium edule HOM05D002321 ORTHO05D007292 1.2e-28 131.0 186 40.9
EL10Ac6g14606 Beta vulgaris HOM05D002321 ORTHO05D007292 3.7e-25 119.4 203 35.5
AUR62030420 Chenopodium quinoa HOM05D002321 ORTHO05D007292 6.3e-25 118.6 80 66.2
SEGI_10212 Sequoiadendron giganteum HOM05D002321 ORTHO05D007292 6.3e-25 118.6 205 32.2
CDE11G0901 Ceratophyllum demersum HOM05D002321 ORTHO05D007292 1.6e-23 114.0 77 67.5
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 5.0e-22 109.0 151 39.7
HPP92_011476 Vanilla planifolia HOM05D002321 ORTHO05D007292 1.5e-21 107.5 191 34.6
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.2e-18 97.8 178 38.8
Hma1.2p1_0199F.1_g085690 Hydrangea macrophylla HOM05D002321 ORTHO05D007292 1.2e-15 87.8 61 67.2
Pp3c18_1720 Physcomitrium patens HOM05D002321 ORTHO05D007292 5.5e-13 79.0 202 24.3
Pp3c18_1727 Physcomitrium patens HOM05D002321 ORTHO05D007292 5.5e-13 79.0 202 24.3
CARHR154550 Cardamine hirsuta HOM05D002321 ORTHO05D007292 1.2e-12 77.8 65 56.9
AagrBONN_evm.TU.Sc2ySwM_344.4091 Anthoceros agrestis HOM05D002321 ORTHO05D007292 4.4e-10 69.3 196 23.5
Mapoly0141s0001 Marchantia polymorpha HOM05D002321 ORTHO05D007292 4.9e-09 65.9 198 26.8


User provided reference genes

Program Settings