Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 4.8e-208 727.6 376 100.0
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 2.2e-165 585.9 437 75.1
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.3e-157 560.1 377 79.0
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 1.9e-156 556.2 374 79.7
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 8.0e-155 550.8 383 77.0
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 1.8e-154 549.7 369 78.9
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 5.2e-154 548.1 383 76.8
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 3.8e-149 531.9 376 73.4
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 5.5e-148 528.1 378 74.1
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 2.1e-147 526.2 382 74.9
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.6e-147 525.4 385 76.4
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 1.0e-146 523.9 376 73.4
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.4e-146 523.5 332 81.9
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 1.4e-146 523.5 373 75.9
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 1.8e-146 523.1 376 73.1
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 5.2e-146 521.5 379 74.4
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.6e-145 519.2 385 72.7
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 7.5e-145 517.7 382 74.3
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 2.2e-144 516.2 371 73.9
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 2.2e-144 516.2 371 73.9
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 4.9e-144 515.0 381 73.2
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 4.9e-144 515.0 372 73.4
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 8.3e-144 514.2 384 72.7
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 8.3e-144 514.2 380 74.2
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 1.1e-143 513.8 328 81.4
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.8e-143 513.1 380 73.9
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 2.4e-143 512.7 325 80.0
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.1e-143 511.9 379 74.4
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 4.1e-143 511.9 377 72.9
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 9.2e-143 510.8 373 72.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 9.2e-143 510.8 326 80.4
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 2.0e-142 509.6 380 72.4
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.7e-142 509.2 367 74.9
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 1.3e-141 506.9 375 73.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 1.7e-141 506.5 319 82.1
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.7e-141 506.5 390 70.0
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 1.7e-141 506.5 386 71.5
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 2.3e-141 506.1 383 71.3
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 2.9e-141 505.8 378 73.0
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 2.9e-141 505.8 379 72.8
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 8.6e-141 504.2 334 79.0
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.5e-140 503.4 341 77.1
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.9e-140 503.1 331 79.5
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 1.9e-140 503.1 372 72.3
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 5.6e-140 501.5 363 73.8
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 5.6e-140 501.5 331 79.2
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.6e-139 500.0 381 73.2
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 2.1e-139 499.6 373 72.9
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.0e-138 497.3 376 71.8
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 1.4e-138 496.9 381 73.0
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 1.8e-138 496.5 370 73.0
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 4.0e-138 495.4 362 73.5
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 8.9e-138 494.2 323 79.6
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 1.5e-137 493.4 323 79.3
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 2.0e-137 493.0 374 72.5
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 5.8e-137 491.5 383 70.2
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 6.4e-136 488.0 398 69.8
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 1.4e-135 486.9 410 65.6
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 4.1e-135 485.3 341 76.2
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 9.2e-135 484.2 327 78.3
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 2.7e-134 482.6 371 69.8
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 2.7e-134 482.6 377 69.2
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 2.7e-134 482.6 331 76.1
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 4.6e-134 481.9 353 73.4
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 4.6e-134 481.9 324 76.9
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 4.6e-134 481.9 322 76.7
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.7e-133 479.9 389 68.1
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 2.3e-133 479.6 322 78.3
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 5.0e-133 478.4 367 69.8
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 6.6e-133 478.0 337 73.6
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 1.1e-132 477.2 327 75.2
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 2.5e-132 476.1 359 69.1
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 5.6e-132 474.9 377 68.2
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.1e-131 473.0 377 66.8
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 8.1e-131 471.1 374 65.8
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 1.8e-130 469.9 377 66.3
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 3.1e-130 469.2 386 65.5
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 4.0e-130 468.8 380 65.3
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 5.2e-130 468.4 374 66.6
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 5.2e-130 468.4 374 65.5
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 5.8e-129 464.9 311 74.3
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 7.5e-129 464.5 374 64.7
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 9.8e-129 464.2 336 72.9
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 1.3e-128 463.8 390 63.8
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 2.2e-128 463.0 375 65.1
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-128 463.0 375 65.1
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.9e-128 462.6 376 65.2
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 3.7e-128 462.2 379 64.9
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 3.7e-128 462.2 376 64.9
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 8.3e-128 461.1 335 70.4
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-127 459.9 327 71.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.9e-127 459.9 377 64.7
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 3.2e-127 459.1 375 65.3
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 9.2e-127 457.6 281 79.0
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 9.2e-127 457.6 343 70.8
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 1.6e-126 456.8 407 60.9
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 1.6e-126 456.8 321 70.4
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 2.7e-126 456.1 375 65.1
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 3.5e-126 455.7 329 73.6
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 6.6e-125 451.4 308 73.7
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 6.6e-125 451.4 368 65.5
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.1e-122 442.6 418 58.4
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 3.1e-122 442.6 330 71.8
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 4.4e-121 438.7 374 64.2
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 4.4e-121 438.7 317 68.8
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.7e-120 436.8 307 70.4
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 3.7e-120 435.6 284 73.6
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.9e-120 435.3 419 57.0
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 4.9e-120 435.3 274 76.3
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 1.1e-119 434.1 323 72.1
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 1.9e-119 433.3 401 58.9
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 1.9e-119 433.3 407 58.7
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 1.9e-119 433.3 401 58.9
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 3.2e-119 432.6 275 75.3
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 4.1e-119 432.2 275 75.6
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-118 430.6 421 57.5
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.7e-118 429.5 358 62.8
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 2.7e-118 429.5 400 58.5
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.3e-117 427.2 401 58.4
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.3e-117 427.2 401 58.4
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.4e-114 416.4 423 58.2
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 9.9e-113 411.0 330 69.7
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 4.3e-108 395.6 364 58.2
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 2.8e-107 392.9 299 73.6
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 5.3e-106 388.7 374 58.8
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 3.4e-105 386.0 262 77.1
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 2.1e-102 376.7 213 88.3
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 7.1e-95 351.7 283 68.2
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 6.0e-94 348.6 254 74.0
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 1.5e-89 334.0 190 89.5
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 4.9e-88 328.9 281 68.7
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 8.4e-88 328.2 387 48.1
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 5.5e-87 325.5 281 68.3
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 5.5e-87 325.5 272 58.5
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 3.0e-85 319.7 275 57.5
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 1.1e-82 311.2 258 65.5
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 2.0e-81 307.0 261 67.8
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 7.9e-78 295.0 257 65.0
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 5.5e-71 272.3 255 50.2
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 1.7e-64 250.8 179 72.1
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 5.0e-64 249.2 179 72.1
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 7.2e-63 245.4 135 88.9
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-62 244.6 179 70.9
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 2.3e-61 240.4 247 55.5
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 1.2e-57 228.0 162 76.5
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 5.2e-45 186.0 103 86.4
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 7.5e-44 182.2 179 57.0
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.3e-43 181.4 116 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 8.5e-40 168.7 157 53.5
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 1.2e-36 158.3 131 66.4
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 4.5e-33 146.4 78 85.9
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 6.6e-32 142.5 77 84.4
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 3.3e-31 140.2 75 88.0
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 4.9e-27 126.3 215 42.3
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 8.3e-27 125.6 114 49.1
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-26 124.0 62 87.1
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 1.6e-25 121.3 88 68.2
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 4.7e-22 109.8 155 41.9
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 8.9e-21 105.5 72 69.4
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 3.4e-20 103.6 104 57.7
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 3.7e-19 100.1 69 78.3
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 1.1e-18 98.6 57 89.5
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 2.7e-17 94.0 141 38.3
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.3e-15 87.0 55 80.0
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 1.1e-13 82.0 55 74.5
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 1.5e-12 78.2 59 64.4


User provided reference genes

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