Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0208100 Rhododendron simsii HOM05D000212 ORTHO05D002824 1.1e-161 573.2 282 100.0
Rhsim10G0208400 Rhododendron simsii HOM05D000212 ORTHO05D002824 1.3e-40 171.0 172 60.5
CSS0027153 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D002824 8.4e-32 141.7 258 41.1
CiPaw.07G061500 Carya illinoinensis HOM05D000212 ORTHO05D002824 8.7e-29 131.7 259 37.5
GSVIVG01006329001 Vitis vinifera HOM05D000212 ORTHO05D002824 4.3e-28 129.4 260 39.2
Thecc.01G013800 Theobroma cacao HOM05D000212 ORTHO05D002824 3.6e-27 126.3 260 38.5
Duzib147G1303 Durio zibethinus HOM05D000212 ORTHO05D002824 8.1e-27 125.2 260 38.1
CiPaw.08G128700 Carya illinoinensis HOM05D000212 ORTHO05D002824 1.8e-26 124.0 259 36.7
Cfa007009 Carpinus fangiana HOM05D000212 ORTHO05D002824 1.5e-25 120.9 259 37.5
Dinv08567 Davidia involucrata HOM05D000212 ORTHO05D002824 1.3e-24 117.9 260 37.3
ClCG10G000550 Citrullus lanatus HOM05D000212 ORTHO05D002824 1.4e-23 114.4 241 36.5
Gorai.007G192000 Gossypium raimondii HOM05D000212 ORTHO05D002824 2.4e-23 113.6 260 37.7
Atru.chr3.874 Acer truncatum HOM05D000212 ORTHO05D002824 7.1e-23 112.1 261 36.8
Gohir.A11G173100 Gossypium hirsutum HOM05D000212 ORTHO05D002824 7.1e-23 112.1 260 37.7
Sed0027405 Sechium edule HOM05D000212 ORTHO05D002824 1.6e-22 110.9 260 37.3
Gorai.003G007400 Gossypium raimondii HOM05D000212 ORTHO05D002824 2.7e-22 110.2 260 35.0
Gohir.D11G180100 Gossypium hirsutum HOM05D000212 ORTHO05D002824 4.6e-22 109.4 260 37.3
Nitab4.5_0001561g0130 Nicotiana tabacum HOM05D000212 ORTHO05D002824 4.6e-22 109.4 94 64.9
Cc07_g11130 Coffea canephora HOM05D000212 ORTHO05D002824 6.0e-22 109.0 260 35.4
Gohir.D03G007100 Gossypium hirsutum HOM05D000212 ORTHO05D002824 6.0e-22 109.0 260 35.0
Manes.01G149200 Manihot esculenta HOM05D000212 ORTHO05D002824 7.9e-22 108.6 258 36.4
Potri.005G110000 Populus trichocarpa HOM05D000212 ORTHO05D002824 1.3e-21 107.8 260 35.4
Gohir.A02G172800 Gossypium hirsutum HOM05D000212 ORTHO05D002824 1.8e-21 107.5 260 35.0
Nn5g30797 Nelumbo nucifera HOM05D000212 ORTHO05D002824 1.8e-21 107.5 260 36.9
PGR119G0517 Punica granatum HOM05D000212 ORTHO05D002824 1.8e-21 107.5 258 34.9
CAN.G354.50 Capsicum annuum HOM05D000212 ORTHO05D002824 2.3e-21 107.1 259 34.7
QL06p051280 Quercus lobata HOM05D000212 ORTHO05D002824 2.3e-21 107.1 259 37.1
CSS0040516 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D002824 3.0e-21 106.7 260 35.4
Manes.02G108200 Manihot esculenta HOM05D000212 ORTHO05D002824 3.0e-21 106.7 260 35.8
Actinidia17418 Actinidia chinensis HOM05D000212 ORTHO05D002824 3.9e-21 106.3 108 55.6
Prupe.7G172600 Prunus persica HOM05D000212 ORTHO05D002824 3.9e-21 106.3 260 37.3
Peaxi162Scf00635g00918 Petunia axillaris HOM05D000212 ORTHO05D002824 1.1e-20 104.8 94 62.8
CANSAT01G2290 Cannabis sativa HOM05D000212 ORTHO05D002824 1.9e-20 104.0 260 36.2
PGSC0003DMG400022554 Solanum tuberosum HOM05D000212 ORTHO05D002824 2.5e-20 103.6 94 62.8
MBI08_g37820_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D002824 5.6e-20 102.4 260 36.2
Nitab4.5_0001685g0090 Nicotiana tabacum HOM05D000212 ORTHO05D002824 5.6e-20 102.4 94 62.8
Oeu048469.1 Olea europaea HOM05D000212 ORTHO05D002824 5.6e-20 102.4 260 35.4
Dinv40124 Davidia involucrata HOM05D000212 ORTHO05D002824 7.4e-20 102.1 258 34.9
TAR625G0660 Trochodendron aralioides HOM05D000212 ORTHO05D002824 9.6e-20 101.7 259 34.0
Cpa.g.sc6.294 Carica papaya HOM05D000212 ORTHO05D002824 1.6e-19 100.9 261 34.5
vmacro22196 Vaccinium macrocarpon HOM05D000212 ORTHO05D002824 1.6e-19 100.9 94 58.5
MELO3C013751.2 Cucumis melo HOM05D000212 ORTHO05D002824 2.8e-19 100.1 258 35.7
RcHm_v2.0_Chr2g0098791 Rosa chinensis HOM05D000212 ORTHO05D002824 2.8e-19 100.1 260 35.8
FAN28G2594 Fragaria x ananassa HOM05D000212 ORTHO05D002824 6.2e-19 99.0 260 36.2
Ciclev10025703m.g Citrus clementina HOM05D000212 ORTHO05D002824 8.1e-19 98.6 264 34.8
Eucgr.I02323 Eucalyptus grandis HOM05D000212 ORTHO05D002824 8.1e-19 98.6 225 37.3
HanXRQChr15g0492971 Helianthus annuus HOM05D000212 ORTHO05D002824 8.1e-19 98.6 263 34.6
PSO541G5499 Papaver somniferum HOM05D000212 ORTHO05D002824 8.1e-19 98.6 258 35.3
CsaV3_3G000630 Cucumis sativus L. HOM05D000212 ORTHO05D002824 1.1e-18 98.2 258 34.9
PSO675G5639 Papaver somniferum HOM05D000212 ORTHO05D002824 1.8e-18 97.4 258 34.9
TWI09G1530 Tripterygium wilfordii HOM05D000212 ORTHO05D002824 2.4e-18 97.1 259 33.2
SalBow3G2485 Salvia bowleyana HOM05D000212 ORTHO05D002824 3.1e-18 96.7 259 35.5
SalBow3G4638 Salvia bowleyana HOM05D000212 ORTHO05D002824 3.1e-18 96.7 259 35.5
Lj4A223G30 Lonicera japonica HOM05D000212 ORTHO05D002824 4.0e-18 96.3 265 32.8
CAN.G890.2 Capsicum annuum HOM05D000212 ORTHO05D002824 5.3e-18 95.9 260 34.2
Duzib264G0614 Durio zibethinus HOM05D000212 ORTHO05D002824 6.9e-18 95.5 94 57.4
Hund14065 Selenicereus undatus HOM05D000212 ORTHO05D002824 6.9e-18 95.5 227 37.0
Solyc02g083540.3 Solanum lycopersicum HOM05D000212 ORTHO05D002824 1.5e-17 94.4 258 35.7
PGSC0003DMG402003586 Solanum tuberosum HOM05D000212 ORTHO05D002824 1.5e-17 94.4 258 35.7
Sopen02g028320 Solanum pennellii HOM05D000212 ORTHO05D002824 2.0e-17 94.0 258 36.0
TAR628G1483 Trochodendron aralioides HOM05D000212 ORTHO05D002824 2.0e-17 94.0 149 43.0
FvH4_1g11310 Fragaria vesca HOM05D000212 ORTHO05D002824 2.6e-17 93.6 260 35.0
Aqoxy6G02139 Aquilegia oxysepala HOM05D000212 ORTHO05D002824 3.4e-17 93.2 262 34.4
Nn6g31963 Nelumbo nucifera HOM05D000212 ORTHO05D002824 3.4e-17 93.2 94 57.4
Peaxi162Scf00328g00415 Petunia axillaris HOM05D000212 ORTHO05D002824 3.4e-17 93.2 94 57.4
TWI73G0570 Tripterygium wilfordii HOM05D000212 ORTHO05D002824 4.5e-17 92.8 260 32.3
Sabra05G0090300 Salix brachista HOM05D000212 ORTHO05D002824 7.6e-17 92.0 94 55.3
DCAR_011609 Daucus carota HOM05D000212 ORTHO05D002824 1.7e-16 90.9 172 39.0
Actinidia22950 Actinidia chinensis HOM05D000212 ORTHO05D002824 2.9e-16 90.1 148 41.9
MD02G1127400 Malus domestica HOM05D000212 ORTHO05D002824 4.9e-16 89.4 260 35.4
Nitab4.5_0009630g0010 Nicotiana tabacum HOM05D000212 ORTHO05D002824 6.5e-16 89.0 94 56.4
MSTRG.2732 Avicennia marina HOM05D000212 ORTHO05D002824 4.2e-15 86.3 259 34.7
VMungo0251G1356 Vigna mungo HOM05D000212 ORTHO05D002824 5.5e-15 85.9 260 35.4
FAN23G2839 Fragaria x ananassa HOM05D000212 ORTHO05D002824 2.7e-14 83.6 212 38.2
TAR381G1304 Trochodendron aralioides HOM05D000212 ORTHO05D005509 2.7e-14 83.6 94 53.2
TPR.G19478 Trifolium pratense HOM05D000212 ORTHO05D002824 6.0e-14 82.4 261 33.7
Lalb_Chr05g0212231 Lupinus albus HOM05D000212 ORTHO05D002824 1.3e-13 81.3 257 33.9
MD15G1241400 Malus domestica HOM05D000212 ORTHO05D002824 1.8e-13 80.9 94 54.3
DCAR_014040 Daucus carota HOM05D000212 ORTHO05D002824 2.3e-13 80.5 93 50.5
Thhalv10025310m.g Eutrema salsugineum HOM05D000212 ORTHO05D002824 3.0e-13 80.1 260 30.0
Ah.02g123270 Amaranthus hybridus HOM05D000212 ORTHO05D002824 3.9e-13 79.7 257 29.2
FAN26G1689 Fragaria x ananassa HOM05D000212 ORTHO05D002824 3.9e-13 79.7 250 32.8
ATR0180G011 Amborella trichopoda HOM05D000212 ORTHO05D002824 5.1e-13 79.3 95 49.5
AT4G35920 Arabidopsis thaliana HOM05D000212 ORTHO05D002824 5.1e-13 79.3 261 32.2
Migut.H02182 Erythranthe guttata HOM05D000212 ORTHO05D002824 5.1e-13 79.3 98 48.0
Aa31LG6G12870 Aethionema arabicum HOM05D000212 ORTHO05D002824 1.1e-12 78.2 221 32.1
Haze_03720 Corylus avellana HOM05D000212 ORTHO05D002824 5.7e-12 75.9 96 50.0
Phvul.003G265800 Phaseolus vulgaris HOM05D000212 ORTHO05D002824 5.7e-12 75.9 260 33.8
Sc16g0001940 Simmondsia chinensis HOM05D000212 ORTHO05D002824 5.7e-12 75.9 258 31.8
THA.LOC104807505 Tarenaya hassleriana HOM05D000212 ORTHO05D002824 5.7e-12 75.9 259 30.5
Ah.03g143150 Amaranthus hybridus HOM05D000212 ORTHO05D002824 7.4e-12 75.5 94 48.9
ClCG01G020490 Citrullus lanatus HOM05D000212 ORTHO05D002824 9.6e-12 75.1 238 32.8
Eucgr.J02474 Eucalyptus grandis HOM05D000212 ORTHO05D002824 9.6e-12 75.1 148 35.1
Glyma.16G123800 Glycine max HOM05D000212 ORTHO05D002824 9.6e-12 75.1 257 31.1
Sed0007955 Sechium edule HOM05D000212 ORTHO05D002824 1.3e-11 74.7 257 28.8
Dinv08566 Davidia involucrata HOM05D000212 ORTHO05D002824 3.7e-11 73.2 78 55.1
ECA246G0373 Erigeron canadensis HOM05D000212 ORTHO05D002824 3.7e-11 73.2 260 29.2
BolC7t46568H Brassica oleracea HOM05D000212 ORTHO05D002824 6.3e-11 72.4 223 30.0
Duzib187G1649 Durio zibethinus HOM05D000212 ORTHO05D002824 6.3e-11 72.4 260 31.9
C01p03090 Brassica napus HOM05D000212 ORTHO05D002824 8.2e-11 72.0 262 29.4
Medtr8g075150 Medicago truncatula HOM05D000212 ORTHO05D002824 8.2e-11 72.0 263 30.8
MELO3C007929.2 Cucumis melo HOM05D000212 ORTHO05D002824 1.1e-10 71.6 233 30.9
Glyma.01G164000 Glycine max HOM05D000212 ORTHO05D002824 1.1e-10 71.6 94 48.9
HanXRQChr16g0531771 Helianthus annuus HOM05D000212 ORTHO05D002824 1.1e-10 71.6 263 30.0
FAN19G2156 Fragaria x ananassa HOM05D000212 ORTHO05D002824 1.4e-10 71.2 275 30.2
A01p02780 Brassica napus HOM05D000212 ORTHO05D002824 1.8e-10 70.9 261 29.9
BraA01t00263Z Brassica rapa HOM05D000212 ORTHO05D002824 1.8e-10 70.9 261 29.9
Glyma.11G079500 Glycine max HOM05D000212 ORTHO05D002824 1.8e-10 70.9 94 47.9
VMungo1215G2759 Vigna mungo HOM05D000212 ORTHO05D002824 1.8e-10 70.9 257 30.7
BolC1t00293H Brassica oleracea HOM05D000212 ORTHO05D002824 2.4e-10 70.5 261 29.9
AUR62018021 Chenopodium quinoa HOM05D000212 ORTHO05D002824 3.1e-10 70.1 260 29.2
Ca_03633_v3 Cicer arietinum L. HOM05D000212 ORTHO05D002824 5.3e-10 69.3 97 50.5
Lsat_1_v5_gn_4_145360 Lactuca sativa HOM05D000212 ORTHO05D002824 5.3e-10 69.3 207 33.3
Os03g0157300 Oryza sativa ssp. japonica HOM05D000212 ORTHO05D002824 5.3e-10 69.3 101 43.6
BcaNung04886 Brassica carinata HOM05D000212 ORTHO05D002824 6.9e-10 68.9 235 28.9
CARHR244320 Cardamine hirsuta HOM05D000212 ORTHO05D002824 1.5e-09 67.8 264 30.7
AUR62003710 Chenopodium quinoa HOM05D000212 ORTHO05D002824 1.5e-09 67.8 94 42.6
Glyma.02G045800 Glycine max HOM05D000212 ORTHO05D002824 1.5e-09 67.8 93 48.4
TPR.G10549 Trifolium pratense HOM05D000212 ORTHO05D002824 2.0e-09 67.4 94 47.9
arahy.Tifrunner.gnm1.ann1.08076P Arachis hypogaea HOM05D000212 ORTHO05D002824 2.6e-09 67.0 94 47.9
Medtr5g022670 Medicago truncatula HOM05D000212 ORTHO05D002824 3.4e-09 66.6 94 46.8
arahy.Tifrunner.gnm1.ann1.3Q2X1A Arachis hypogaea HOM05D000212 ORTHO05D002824 4.5e-09 66.2 94 46.8
arahy.Tifrunner.gnm1.ann1.JHJC5G Arachis hypogaea HOM05D000212 ORTHO05D002824 4.5e-09 66.2 94 46.8
Phvul.002G106200 Phaseolus vulgaris HOM05D000212 ORTHO05D002824 4.5e-09 66.2 94 46.8
HanXRQChr14g0441751 Helianthus annuus HOM05D000212 ORTHO05D002824 5.9e-09 65.9 94 43.6
Lj2g0004895 Lotus japonicus HOM05D000212 ORTHO05D002824 7.6e-09 65.5 94 45.7
AL3G50800 Arabidopsis lyrata HOM05D000212 ORTHO05D002824 1.0e-08 65.1 129 36.4
MSTRG.1169 Avicennia marina HOM05D000212 ORTHO05D002824 1.0e-08 65.1 267 27.3
Nitab4.5_0001789g0130 Nicotiana tabacum HOM05D000212 ORTHO05D002824 1.0e-08 65.1 94 46.8
Lalb_Chr16g0391431 Lupinus albus HOM05D000212 ORTHO05D002824 1.3e-08 64.7 263 29.7
CDE05G2536 Ceratophyllum demersum HOM05D000212 ORTHO05D002824 2.2e-08 63.9 231 29.9
Carub.0003s3192 Capsella rubella HOM05D000212 ORTHO05D002824 2.9e-08 63.5 95 43.2
SGA_v2.0_scaffold2G00973 Striga asiatica HOM05D000212 ORTHO05D002824 2.9e-08 63.5 216 31.5
Ca_24925_v3 Cicer arietinum L. HOM05D000212 ORTHO05D002824 5.0e-08 62.8 95 49.5
arahy.Tifrunner.gnm1.ann1.30ZN3V Arachis hypogaea HOM05D000212 ORTHO05D002824 6.5e-08 62.4 94 47.9
Carub.0007s0430 Capsella rubella HOM05D000212 ORTHO05D002824 1.9e-07 60.8 263 30.0
Psat2g152920 Pisum sativum HOM05D000212 ORTHO05D002824 1.9e-07 60.8 96 46.9
Sp7g33700 Schrenkiella parvula HOM05D000212 ORTHO05D002824 1.9e-07 60.8 260 28.5
Lsat_1_v5_gn_4_106460 Lactuca sativa HOM05D000212 ORTHO05D002824 4.2e-07 59.7 257 25.3
CsaV3_6G047370 Cucumis sativus L. HOM05D000212 ORTHO05D002824 5.5e-07 59.3 94 40.4
Lsat_1_v5_gn_3_72001 Lactuca sativa HOM05D000212 ORTHO05D002824 7.2e-07 58.9 266 28.6
Zm00001eb004320 Zea mays HOM05D000212 ORTHO05D002824 7.2e-07 58.9 105 39.0
AT2G17780 Arabidopsis thaliana HOM05D000212 ORTHO05D002824 9.3e-07 58.5 129 34.1
Lj4g0017355 Lotus japonicus HOM05D000212 ORTHO05D002824 1.2e-06 58.2 98 43.9
AL7G15120 Arabidopsis lyrata HOM05D000212 ORTHO05D002824 4.6e-06 56.2 205 29.8
Psat4g102160 Pisum sativum HOM05D000212 ORTHO05D002824 7.9e-06 55.5 97 40.2


User provided reference genes

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