Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0200700 Rhododendron simsii HOM05D009321 ORTHO05D001711 1.3e-126 456.4 238 100.0
Rhsim10G0184700 Rhododendron simsii HOM05D009321 ORTHO05D000285 6.1e-60 235.0 128 98.4
Rhsim13G0034900 Rhododendron simsii HOM05D009321 ORTHO05D010529 1.3e-49 200.7 145 77.9
Rhsim04G0069700 Rhododendron simsii HOM05D001781 ORTHO05D001711 1.5e-34 150.6 82 89.0
Rhsim01G0076800 Rhododendron simsii HOM05D001781 ORTHO05D001711 4.4e-34 149.1 85 84.7
vmacro20596 Vaccinium macrocarpon HOM05D001781 ORTHO05D001711 4.3e-29 132.5 85 78.8
Actinidia40455 Actinidia chinensis HOM05D001781 ORTHO05D001711 7.8e-23 111.7 85 63.5
Actinidia22004 Actinidia chinensis HOM05D001781 ORTHO05D001711 3.9e-22 109.4 85 63.5
Dinv36549 Davidia involucrata HOM05D001781 ORTHO05D001711 1.5e-21 107.5 85 58.8
CSS0022836 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 2.5e-21 106.7 86 58.1
CSS0038934 Camellia sinensis var. sinensis HOM05D001781 ORTHO05D001711 2.5e-21 106.7 86 58.1
TWI34G1451 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 1.0e-14 84.7 88 48.9
Manes.14G130400 Manihot esculenta HOM05D001781 ORTHO05D001711 1.5e-13 80.9 87 44.8
AUR62033468 Chenopodium quinoa HOM05D001781 ORTHO05D001711 1.9e-13 80.5 89 47.2
Hma1.2p1_0665F.1_g199160 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 4.3e-13 79.3 85 52.9
Hma1.2p1_0018F.1_g012670 Hydrangea macrophylla HOM05D001781 ORTHO05D001711 7.4e-13 78.6 86 55.8
TWI63G0260 Tripterygium wilfordii HOM05D001781 ORTHO05D001711 1.3e-12 77.8 92 46.7
Oeu006925.1 Olea europaea HOM05D001781 ORTHO05D001711 6.2e-12 75.5 81 49.4
Nn2g11963 Nelumbo nucifera HOM05D001781 ORTHO05D001711 8.1e-12 75.1 87 43.7
CANSAT11G0594 Cannabis sativa HOM05D001781 ORTHO05D001711 1.8e-11 73.9 85 44.7
Lalb_Chr12g0197811 Lupinus albus HOM05D001781 ORTHO05D001711 3.1e-11 73.2 95 46.3
arahy.Tifrunner.gnm1.ann1.B60469 Arachis hypogaea HOM05D001781 ORTHO05D001711 4.0e-11 72.8 96 41.7
arahy.Tifrunner.gnm1.ann1.JJB9SI Arachis hypogaea HOM05D001781 ORTHO05D001711 4.0e-11 72.8 96 41.7
Hund21486 Selenicereus undatus HOM05D001781 ORTHO05D001711 4.0e-11 72.8 88 44.3
EL10Ac5g12613 Beta vulgaris HOM05D001781 ORTHO05D001711 5.3e-11 72.4 79 46.8
AUR62011086 Chenopodium quinoa HOM05D001781 ORTHO05D001711 5.3e-11 72.4 145 37.9
Potri.009G130600 Populus trichocarpa HOM05D001781 ORTHO05D001711 5.3e-11 72.4 86 46.5
Ah.14g080640 Amaranthus hybridus HOM05D001781 ORTHO05D001711 6.9e-11 72.0 84 42.9
Atru.chr7.1195 Acer truncatum HOM05D001781 ORTHO05D001711 1.2e-10 71.2 86 46.5
MSTRG.26142 Avicennia marina HOM05D001781 ORTHO05D001711 1.2e-10 71.2 67 52.2
Ciclev10008851m.g Citrus clementina HOM05D001781 ORTHO05D001711 1.5e-10 70.9 86 45.3
Lj4g0027268 Lotus japonicus HOM05D001781 ORTHO05D001711 2.0e-10 70.5 85 47.1
Prupe.7G239500 Prunus persica HOM05D001781 ORTHO05D001711 3.4e-10 69.7 75 46.7
Migut.K00116 Erythranthe guttata HOM05D001781 ORTHO05D001711 5.8e-10 68.9 88 40.9
Eucgr.C04180 Eucalyptus grandis HOM05D001781 ORTHO05D001711 1.3e-09 67.8 88 43.2
Glyma.05G008400 Glycine max HOM05D001781 ORTHO05D001711 1.3e-09 67.8 82 43.9
RcHm_v2.0_Chr2g0089141 Rosa chinensis HOM05D001781 ORTHO05D001711 2.9e-09 66.6 79 46.8
Cfa003345 Carpinus fangiana HOM05D001781 ORTHO05D001711 4.9e-09 65.9 89 41.6
THA.LOC104826540 Tarenaya hassleriana HOM05D001781 ORTHO05D001711 4.9e-09 65.9 87 39.1
Haze_25615 Corylus avellana HOM05D001781 ORTHO05D001711 8.4e-09 65.1 88 42.0
Sabra09G0101100 Salix brachista HOM05D001781 ORTHO05D001711 8.4e-09 65.1 86 43.0
Cc06_g08800 Coffea canephora HOM05D001781 ORTHO05D001711 1.1e-08 64.7 84 40.5
Peaxi162Scf00591g00511 Petunia axillaris HOM05D001781 ORTHO05D001711 1.1e-08 64.7 86 45.3
Sabra18G0072400 Salix brachista HOM05D001781 ORTHO05D012013 1.1e-08 64.7 87 42.5
VMungo1215G1152 Vigna mungo HOM05D001781 ORTHO05D001711 1.1e-08 64.7 92 43.5
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.4e-08 64.3 89 42.7
QL02p087754 Quercus lobata HOM05D001781 ORTHO05D001711 1.4e-08 64.3 89 39.3
Glyma.17G116700 Glycine max HOM05D001781 ORTHO05D001711 1.9e-08 63.9 92 41.3
Sabra15G0077000 Salix brachista HOM05D001781 ORTHO05D011545 1.9e-08 63.9 87 42.5
Phvul.003G162600 Phaseolus vulgaris HOM05D001781 ORTHO05D001711 2.5e-08 63.5 92 41.3
Gohir.A07G034784 Gossypium hirsutum HOM05D001781 ORTHO05D001711 4.2e-08 62.8 93 39.8
Lalb_Chr07g0178791 Lupinus albus HOM05D001781 ORTHO05D001711 4.2e-08 62.8 90 43.3
MD02G1035700 Malus domestica HOM05D001781 ORTHO05D001711 4.2e-08 62.8 75 50.7
Sabra13G0039300 Salix brachista HOM05D001781 ORTHO05D011545 4.2e-08 62.8 87 41.4
Duzib187G1560 Durio zibethinus HOM05D001781 ORTHO05D001711 5.5e-08 62.4 54 50.0
COL.COLO4_05760 Corchorus olitorius HOM05D001781 ORTHO05D001711 7.1e-08 62.0 89 37.1
Duzib168G2385 Durio zibethinus HOM05D001781 ORTHO05D001711 7.1e-08 62.0 53 49.1
Nn8g39386 Nelumbo nucifera HOM05D001781 ORTHO05D001711 7.1e-08 62.0 88 40.9
Thecc.09G122900 Theobroma cacao HOM05D001781 ORTHO05D001711 9.3e-08 61.6 91 38.5
SalBow1G3291 Salvia bowleyana HOM05D001781 ORTHO05D001711 1.6e-07 60.8 41 68.3
SGA_v2.0_scaffold273G46405 Striga asiatica HOM05D001781 ORTHO05D001711 1.6e-07 60.8 51 52.9
Gohir.D07G038700 Gossypium hirsutum HOM05D001781 ORTHO05D001711 2.7e-07 60.1 93 38.7
Gorai.001G040700 Gossypium raimondii HOM05D001781 ORTHO05D001711 2.7e-07 60.1 93 38.7
PGR044G0682 Punica granatum HOM05D001781 ORTHO05D001711 2.7e-07 60.1 88 35.2
Sed0027740 Sechium edule HOM05D001781 ORTHO05D001711 2.7e-07 60.1 82 46.3
Ca_21697_v3 Cicer arietinum L. HOM05D001781 ORTHO05D001711 4.6e-07 59.3 91 40.7
Lj4A461T9 Lonicera japonica HOM05D001781 ORTHO05D001711 6.0e-07 58.9 68 45.6
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.9e-07 58.5 79 41.8
FvH4_1g03610 Fragaria vesca HOM05D001781 ORTHO05D001711 1.0e-06 58.2 77 42.9
FAN19G3215 Fragaria x ananassa HOM05D001781 ORTHO05D001711 1.0e-06 58.2 77 42.9
FAN26G1253 Fragaria x ananassa HOM05D001781 ORTHO05D001711 1.0e-06 58.2 78 38.5
ClCG11G002860 Citrullus lanatus HOM05D001781 ORTHO05D001711 3.0e-06 56.6 83 42.2
MELO3C004524.2 Cucumis melo HOM05D001781 ORTHO05D001711 3.0e-06 56.6 84 44.0
Psat4g041560 Pisum sativum HOM05D001781 ORTHO05D001711 3.0e-06 56.6 86 39.5
Sc18g0000720 Simmondsia chinensis HOM05D001781 ORTHO05D001711 3.0e-06 56.6 81 40.7
AT3G19360 Arabidopsis thaliana HOM05D001781 ORTHO05D001711 5.1e-06 55.8 80 41.2
CiPaw.03G241600 Carya illinoinensis HOM05D001781 ORTHO05D001711 5.1e-06 55.8 91 36.3
Nitab4.5_0005411g0020 Nicotiana tabacum HOM05D001781 ORTHO05D001711 5.1e-06 55.8 101 35.6
BraA03t13274Z Brassica rapa HOM05D001781 ORTHO05D001711 6.7e-06 55.5 82 40.2
MD15G1175900 Malus domestica HOM05D001781 ORTHO05D001711 6.7e-06 55.5 75 46.7
Nitab4.5_0004188g0030 Nicotiana tabacum HOM05D001781 ORTHO05D001711 6.7e-06 55.5 101 35.6
Sc08g0006760 Simmondsia chinensis HOM05D001781 ORTHO05D001711 6.7e-06 55.5 48 52.1
TAR625G1385 Trochodendron aralioides HOM05D001781 ORTHO05D001711 6.7e-06 55.5 85 41.2
AL3G32760 Arabidopsis lyrata HOM05D001781 ORTHO05D001711 8.7e-06 55.1 84 39.3
Carub.0003s1918 Capsella rubella HOM05D001781 ORTHO05D001711 8.7e-06 55.1 84 39.3
CsaV3_2G002700 Cucumis sativus L. HOM05D001781 ORTHO05D001711 8.7e-06 55.1 84 44.0


User provided reference genes

Program Settings