Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.5e-196 687.2 344 100.0
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.5e-128 461.8 333 73.6
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.9e-72 275.4 337 52.2
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.9e-54 217.2 335 45.7
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 7.3e-46 188.7 313 42.2
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 7.3e-46 188.7 308 40.6
Rhsim10G0204100 Rhododendron simsii HOM05D005863 ORTHO05D003355 6.6e-39 165.6 211 50.2
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 3.6e-37 159.8 324 37.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.6e-29 134.4 355 30.1
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 7.6e-27 125.6 93 62.4
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.2e-26 124.0 282 32.3
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 6.4e-26 122.5 273 30.8
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.3e-25 118.6 343 27.7
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.5e-24 116.7 297 31.0
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.6e-21 107.8 337 26.1
Actinidia35403 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.2e-19 101.7 279 34.1
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 1.5e-19 101.3 258 29.5
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.5e-19 99.8 249 27.7
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.5e-19 99.8 257 28.0
CiPaw.12G138700 Carya illinoinensis HOM05D014719 ORTHO05D003355 1.3e-18 98.2 344 25.3
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 1.7e-18 97.8 257 28.0
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 2.2e-18 97.4 113 43.4
Duzib213G0291 Durio zibethinus HOM05D005863 ORTHO05D003355 2.9e-18 97.1 288 27.8
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 6.4e-18 95.9 259 33.6
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 2.4e-17 94.0 259 32.8
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 5.5e-17 92.8 81 50.6
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.2e-16 91.7 104 43.3
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.1e-16 90.9 293 27.3
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.7e-16 90.5 105 41.0
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 4.6e-16 89.7 284 27.5
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.0e-15 88.6 240 31.2
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 1.3e-15 88.2 58 55.2
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 1.8e-15 87.8 296 26.0
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 3.0e-15 87.0 58 58.6
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 6.7e-15 85.9 81 46.9
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 8.7e-15 85.5 111 38.7
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 8.7e-15 85.5 113 38.9
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 2.5e-14 84.0 119 32.8
Glyma.09G051600 Glycine max HOM05D005863 ORTHO05D003355 5.6e-14 82.8 58 53.4
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.3e-13 81.6 58 55.2
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 1.3e-13 81.6 58 55.2
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 2.8e-13 80.5 108 38.0
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 3.7e-13 80.1 58 53.4
Psat1g149600 Pisum sativum HOM05D005863 ORTHO05D003355 1.1e-12 78.6 58 50.0
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 2.4e-12 77.4 266 24.1
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 3.1e-12 77.0 282 26.6
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 6.9e-12 75.9 59 50.8
ECA236G3808 Erigeron canadensis HOM05D000747 ORTHO05D001683 9.0e-12 75.5 49 55.1
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 9.0e-12 75.5 122 33.6
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 1.2e-11 75.1 59 49.2
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 2.6e-11 73.9 57 49.1
Glyma.15G157900 Glycine max HOM05D005863 ORTHO05D003355 4.5e-11 73.2 63 44.4
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.8e-11 72.8 302 24.2
SalBow6G1550 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.3e-10 71.6 134 32.8
SalBow8G3261 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.3e-10 71.6 93 39.8
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 1.7e-10 71.2 77 44.2
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.7e-10 71.2 83 37.3
Carub.0001s4444 Capsella rubella HOM05D012516 ORTHO05D003355 2.2e-10 70.9 93 37.6
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.9e-10 70.5 69 39.1
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 2.9e-10 70.5 62 45.2
AT1G55865 Arabidopsis thaliana HOM05D012516 ORTHO05D003355 4.9e-10 69.7 73 42.5
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 4.9e-10 69.7 92 37.0
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 6.5e-10 69.3 99 35.4
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 6.5e-10 69.3 63 42.9
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 8.4e-10 68.9 59 39.0
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.4e-09 68.2 81 42.0
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.4e-09 68.2 102 36.3
Thhalv10011171m.g Eutrema salsugineum HOM05D000747 ORTHO05D001683 1.4e-09 68.2 73 39.7
FAN26G0704 Fragaria x ananassa HOM05D014719 ORTHO05D003355 1.9e-09 67.8 108 33.3
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 3.2e-09 67.0 83 37.3
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.2e-09 67.0 67 43.3
CARHR045560 Cardamine hirsuta HOM05D000747 ORTHO05D001683 4.2e-09 66.6 58 43.1
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 4.2e-09 66.6 58 41.4
Manes.02G222900 Manihot esculenta HOM05D005863 ORTHO05D003355 4.2e-09 66.6 274 26.3
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 4.2e-09 66.6 58 43.1
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.5e-09 66.2 102 33.3
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 7.1e-09 65.9 94 37.2
Sed0025324 Sechium edule HOM05D031146 ORTHO05D003355 9.3e-09 65.5 57 47.4
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 9.3e-09 65.5 76 35.5
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.2e-08 65.1 93 36.6
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.2e-08 65.1 65 38.5
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.2e-08 65.1 61 42.6
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 1.2e-08 65.1 85 32.9
Haze_09834 Corylus avellana HOM05D014719 ORTHO05D003355 1.6e-08 64.7 105 39.0
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 2.1e-08 64.3 149 30.2
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.1e-08 64.3 100 27.0
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.7e-08 63.9 83 32.5
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 2.7e-08 63.9 90 33.3
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 3.5e-08 63.5 72 38.9
ClCG09G021400 Citrullus lanatus HOM05D031146 ORTHO05D003355 3.5e-08 63.5 39 64.1
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 3.5e-08 63.5 66 36.4
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.5e-08 63.5 59 40.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 4.6e-08 63.2 61 39.3
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 4.6e-08 63.2 85 32.9
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 4.6e-08 63.2 61 37.7
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 6.0e-08 62.8 76 34.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.0e-08 62.8 81 34.6
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 6.0e-08 62.8 81 34.6
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 7.9e-08 62.4 59 40.7
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.0e-07 62.0 92 33.7
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.0e-07 62.0 74 33.8
Phvul.009G242100 Phaseolus vulgaris HOM05D005863 ORTHO05D003355 1.3e-07 61.6 84 41.7
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 1.8e-07 61.2 72 37.5
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.8e-07 61.2 59 37.3
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.8e-07 61.2 61 37.7
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.8e-07 61.2 61 37.7
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 1.8e-07 61.2 58 44.8
CDE02G3774 Ceratophyllum demersum HOM05D005863 ORTHO05D003355 2.3e-07 60.8 67 40.3
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 2.3e-07 60.8 58 39.7
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 2.3e-07 60.8 78 32.1
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.3e-07 60.8 81 33.3
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 3.0e-07 60.5 59 37.3
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 3.0e-07 60.5 67 32.8
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 3.0e-07 60.5 59 39.0
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 3.0e-07 60.5 100 26.0
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 3.0e-07 60.5 104 24.0
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 3.9e-07 60.1 50 44.0
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 3.9e-07 60.1 88 30.7
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 5.1e-07 59.7 64 34.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 5.1e-07 59.7 73 32.9
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 5.1e-07 59.7 108 32.4
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 6.7e-07 59.3 69 36.2
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 6.7e-07 59.3 59 42.4
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.7e-07 59.3 68 35.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 6.7e-07 59.3 61 39.3
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 8.7e-07 58.9 49 42.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 8.7e-07 58.9 58 39.7
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 8.7e-07 58.9 74 29.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.1e-06 58.5 58 37.9
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.1e-06 58.5 60 36.7
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 1.1e-06 58.5 58 39.7
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 1.5e-06 58.2 74 39.2
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.5e-06 58.2 62 38.7
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.9e-06 57.8 85 30.6
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 1.9e-06 57.8 50 42.0
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 2.5e-06 57.4 102 34.3
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 2.5e-06 57.4 68 38.2
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 2.5e-06 57.4 67 35.8
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 3.3e-06 57.0 68 35.3
AUR62005538 Chenopodium quinoa HOM05D025851 ORTHO05D044019 4.3e-06 56.6 55 40.0
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 4.3e-06 56.6 54 40.7
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.3e-06 56.6 57 36.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 7.4e-06 55.8 112 28.6
COL.COLO4_09843 Corchorus olitorius HOM05D005863 ORTHO05D003355 7.4e-06 55.8 222 24.8
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 7.4e-06 55.8 78 35.9
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 9.6e-06 55.5 58 34.5


User provided reference genes

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