Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 3.6e-252 874.4 434 100.0
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.0e-205 719.2 434 80.6
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 2.4e-203 712.2 409 87.3
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.7e-201 706.1 437 80.1
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 9.4e-200 700.3 436 79.8
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 1.4e-198 696.4 434 79.3
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 1.7e-196 689.5 441 77.8
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 2.2e-196 689.1 441 77.8
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 1.6e-194 682.9 435 78.6
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 5.9e-194 681.0 441 77.8
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.9e-192 676.0 434 76.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 5.5e-192 674.5 436 77.8
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 7.2e-192 674.1 429 77.6
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 1.2e-191 673.3 432 77.5
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 2.1e-191 672.5 432 77.3
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 6.1e-191 671.0 431 77.3
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 6.1e-191 671.0 432 77.5
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 8.0e-191 670.6 431 78.0
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 8.0e-191 670.6 441 75.7
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.0e-190 670.2 435 78.2
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.0e-190 670.2 435 76.1
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 1.4e-190 669.8 436 76.6
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 1.8e-190 669.5 437 76.7
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 1.8e-190 669.5 438 76.3
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.0e-190 668.7 440 77.3
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 4.0e-190 668.3 433 77.4
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.0e-190 668.3 430 77.9
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 4.0e-190 668.3 435 78.2
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 6.8e-190 667.5 428 77.3
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 1.2e-189 666.8 435 77.5
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.5e-189 666.4 440 76.8
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.5e-189 666.4 439 74.7
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 2.0e-189 666.0 435 76.1
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.6e-189 665.6 434 75.3
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 2.6e-189 665.6 437 76.4
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 4.4e-189 664.8 434 76.0
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 5.7e-189 664.5 433 77.8
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 7.5e-189 664.1 436 76.1
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 7.5e-189 664.1 434 75.6
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 9.8e-189 663.7 439 76.1
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.2e-188 662.5 435 77.0
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 2.2e-188 662.5 432 77.3
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 2.2e-188 662.5 431 77.0
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.8e-188 662.1 435 75.9
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 3.7e-188 661.8 432 77.3
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 3.7e-188 661.8 387 82.2
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.1e-187 660.2 431 76.3
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.4e-187 659.8 435 76.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.4e-187 659.8 434 74.9
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.4e-187 659.8 383 82.0
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 5.4e-187 657.9 432 76.9
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 7.0e-187 657.5 432 76.2
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 7.0e-187 657.5 433 75.3
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 7.0e-187 657.5 395 81.5
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 9.1e-187 657.1 430 76.0
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 9.1e-187 657.1 437 75.3
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 9.1e-187 657.1 387 81.7
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.6e-186 656.4 432 77.3
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 2.0e-186 656.0 435 75.2
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 3.5e-186 655.2 412 77.4
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 4.5e-186 654.8 433 74.6
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 5.9e-186 654.4 430 75.6
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 5.9e-186 654.4 430 75.6
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.0e-185 653.7 432 75.2
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.3e-185 653.3 438 75.6
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.7e-185 652.9 393 81.2
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 2.3e-185 652.5 434 74.4
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 2.9e-185 652.1 388 81.4
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 2.9e-185 652.1 436 75.0
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.8e-185 651.7 389 82.3
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.8e-185 651.7 434 76.3
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 3.8e-185 651.7 439 74.0
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 6.6e-185 651.0 430 75.8
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 6.6e-185 651.0 389 82.3
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 8.6e-185 650.6 429 75.8
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.1e-184 650.2 433 74.1
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 1.1e-184 650.2 430 75.8
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 1.5e-184 649.8 440 73.9
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 2.5e-184 649.0 397 80.1
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 7.2e-184 647.5 428 75.9
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 7.2e-184 647.5 430 74.4
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 1.2e-183 646.7 430 75.6
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 1.2e-183 646.7 429 73.9
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 1.6e-183 646.4 427 74.9
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.1e-183 646.0 403 78.9
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.8e-183 645.6 395 79.2
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 3.6e-183 645.2 438 73.5
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 4.7e-183 644.8 434 74.0
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 4.7e-183 644.8 401 79.1
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 4.7e-183 644.8 440 72.5
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 4.7e-183 644.8 439 74.3
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 6.1e-183 644.4 430 74.2
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.0e-182 642.1 373 82.8
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.0e-182 641.7 437 73.2
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 5.2e-182 641.3 430 74.9
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 5.7e-181 637.9 412 75.0
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 7.5e-181 637.5 434 73.5
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 1.3e-180 636.7 420 76.2
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 1.3e-180 636.7 420 76.2
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 2.8e-180 635.6 425 74.8
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 3.7e-180 635.2 404 77.2
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.1e-179 633.6 364 83.0
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 1.4e-179 633.3 407 75.9
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.4e-179 633.3 414 75.4
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 4.1e-179 631.7 435 73.3
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 7.8e-178 627.5 434 72.4
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 1.7e-177 626.3 435 73.6
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 5.0e-177 624.8 436 74.1
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.9e-176 622.9 368 80.7
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 4.0e-174 615.1 436 71.6
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 2.0e-173 612.8 434 70.3
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 3.4e-173 612.1 361 80.3
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.8e-173 611.3 437 70.0
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 7.5e-173 610.9 433 71.4
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 2.0e-170 602.8 413 71.2
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.5e-168 596.7 447 67.3
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.3e-168 595.5 436 69.5
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.2e-167 593.6 437 70.5
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.8e-166 589.7 433 68.8
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.9e-166 587.4 333 84.1
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-165 587.0 331 84.0
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.2e-164 582.8 331 83.4
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 8.3e-164 580.9 331 84.0
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 3.0e-161 572.4 385 72.5
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 2.5e-160 569.3 435 67.1
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 3.6e-159 565.5 333 82.3
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 3.0e-153 545.8 391 66.5
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 8.6e-153 544.3 381 68.2
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 8.6e-153 544.3 361 71.5
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 4.9e-148 528.5 438 65.1
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 8.4e-148 527.7 391 66.0
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.4e-147 526.9 391 66.0
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 5.6e-136 488.4 433 61.7
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-132 475.3 312 76.3
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.8e-129 466.8 361 62.0
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 3.3e-128 462.6 379 59.4
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 7.4e-128 461.5 431 60.1
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 4.5e-125 452.2 438 56.6
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 1.3e-113 414.1 388 53.6
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 9.1e-102 374.8 440 50.7
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 2.0e-88 330.5 362 48.1
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 2.8e-87 326.6 256 67.6
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-86 323.6 245 68.2
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.7e-79 300.8 176 79.0
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.8e-79 300.1 435 43.7
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 4.8e-79 299.3 179 81.0
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 4.1e-78 296.2 176 77.3
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 5.5e-75 285.8 260 60.8
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 1.7e-68 264.2 258 56.6
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.0e-65 255.0 252 56.7
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.5e-59 234.6 188 64.4
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 3.3e-59 233.4 365 36.7
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 6.8e-57 225.7 178 66.9
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 8.9e-57 225.3 432 33.3
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 2.0e-53 214.2 323 38.7
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 3.0e-52 210.3 163 68.7
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 2.1e-50 204.1 150 67.3
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.2e-50 202.6 190 56.8
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 6.8e-49 199.1 157 66.2
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 2.6e-48 197.2 157 65.6
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 6.4e-47 192.6 157 65.0
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.4e-46 189.5 316 39.6
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 2.7e-45 187.2 152 65.1
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.0e-44 185.3 109 78.9
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 4.7e-42 176.4 147 63.9
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 3.4e-32 143.7 148 56.8
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 3.8e-31 140.2 83 79.5
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.5e-29 133.7 91 71.4
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.5e-29 133.7 78 78.2
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 2.0e-24 117.9 293 29.0
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.7e-23 114.8 162 46.3
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.9e-23 113.2 271 33.2
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 4.2e-22 110.2 63 88.9
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.6e-21 108.2 67 86.6
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.0e-20 104.0 135 47.4
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 1.6e-18 98.2 64 73.4
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.9e-15 87.4 85 51.8
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.0e-13 79.7 56 69.6
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.1e-12 76.6 129 42.6
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 2.8e-10 70.9 50 68.0
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 4.0e-09 67.0 40 85.0
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 9.0e-09 65.9 42 73.8
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 2.6e-08 64.3 37 81.1
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 3.4e-08 63.9 41 78.0
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 1.3e-07 62.0 61 52.5
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 8.4e-07 59.3 40 77.5
Actinidia22909 Actinidia chinensis HOM05D003687 ORTHO05D057990 2.5e-06 57.8 113 45.1
Dinv11589 Davidia involucrata HOM05D003687 ORTHO05D004571 7.1e-06 56.2 31 77.4


User provided reference genes

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