Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.1e-78 294.7 149 100.0
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.6e-42 175.3 149 65.8
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 4.0e-41 171.8 149 64.4
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 8.9e-41 170.6 149 63.8
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-39 166.8 115 74.8
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 6.6e-36 154.5 149 59.1
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.5e-35 153.3 149 59.1
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 4.3e-35 151.8 149 59.1
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 3.6e-34 148.7 109 74.3
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 3.4e-32 142.1 115 65.2
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.3e-31 140.2 120 63.3
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-31 139.4 144 56.2
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-31 139.4 110 67.3
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.8e-31 138.7 115 66.1
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.4e-30 136.0 144 55.6
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.4e-30 136.0 115 61.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 2.4e-30 136.0 115 61.7
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.4e-30 134.8 112 64.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 7.1e-30 134.4 144 54.9
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 7.1e-30 134.4 110 64.5
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 9.2e-30 134.0 115 61.7
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.2e-29 133.7 115 61.7
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.6e-29 133.3 115 61.7
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 4.6e-29 131.7 144 54.9
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 6.0e-29 131.3 113 65.5
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 7.8e-29 131.0 115 60.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.0e-28 130.6 110 62.7
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.6e-28 127.9 115 59.1
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 6.6e-28 127.9 115 58.3
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 8.7e-28 127.5 110 61.8
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.1e-27 127.1 139 51.1
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.1e-27 127.1 115 57.4
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.3e-27 125.6 115 58.3
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 9.6e-27 124.0 144 50.0
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.2e-26 123.6 110 60.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.1e-26 122.9 115 58.3
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 2.8e-26 122.5 110 59.1
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 2.8e-26 122.5 110 59.1
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 6.2e-26 121.3 113 58.4
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.8e-25 119.8 112 57.1
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 1.8e-25 119.8 123 53.7
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 3.1e-25 119.0 112 57.1
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 5.2e-25 118.2 112 57.1
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 9.0e-25 117.5 112 57.1
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 1.2e-24 117.1 112 57.1
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 1.2e-24 117.1 112 57.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 1.5e-24 116.7 137 50.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 1.5e-24 116.7 112 58.0
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.5e-24 116.7 113 58.4
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.4e-24 115.5 112 57.1
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.4e-24 115.5 77 70.1
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 4.4e-24 115.2 147 49.0
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 4.4e-24 115.2 112 56.2
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 4.4e-24 115.2 75 72.0
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 5.8e-24 114.8 147 48.3
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 5.8e-24 114.8 112 54.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 7.6e-24 114.4 112 57.1
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 7.6e-24 114.4 112 54.5
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 7.6e-24 114.4 112 54.5
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 2.2e-23 112.8 109 56.9
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.2e-23 112.8 140 48.6
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.9e-23 112.5 112 54.5
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.9e-23 112.5 112 54.5
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 2.9e-23 112.5 110 56.4
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 2.9e-23 112.5 111 55.0
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 4.9e-23 111.7 108 59.3
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 6.4e-23 111.3 112 54.5
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 8.4e-23 110.9 120 52.5
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.1e-22 110.5 112 53.6
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 1.1e-22 110.5 115 53.9
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.1e-22 110.5 122 53.3
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 1.4e-22 110.2 112 51.8
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.9e-22 109.8 112 55.4
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 2.4e-22 109.4 109 55.0
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.4e-22 109.4 115 52.2
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 2.4e-22 109.4 115 52.2
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 2.4e-22 109.4 91 69.2
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.4e-22 109.4 83 66.3
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.2e-22 109.0 112 50.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.2e-22 109.0 113 52.2
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 4.2e-22 108.6 113 53.1
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 7.1e-22 107.8 115 52.2
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 9.3e-22 107.5 114 50.9
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 9.3e-22 107.5 109 55.0
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 9.3e-22 107.5 109 55.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 2.7e-21 105.9 113 50.4
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.5e-21 105.5 147 45.6
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 4.6e-21 105.1 112 50.0
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 6.0e-21 104.8 75 68.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 1.0e-20 104.0 75 66.7
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.7e-20 103.2 162 41.4
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 3.9e-20 102.1 75 68.0
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 5.1e-20 101.7 144 46.5
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 5.1e-20 101.7 86 61.6
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 6.6e-20 101.3 86 59.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.1e-19 100.5 109 48.6
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.1e-19 100.5 113 51.3
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.5e-19 100.1 110 51.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.5e-19 100.1 192 40.1
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 1.9e-19 99.8 76 60.5
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.9e-19 99.8 75 66.7
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.3e-19 99.0 112 44.6
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 3.3e-19 99.0 112 47.3
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 5.6e-19 98.2 75 64.0
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.3e-18 97.1 200 38.5
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 1.3e-18 97.1 75 65.3
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.3e-18 97.1 75 65.3
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 2.1e-18 96.3 75 64.0
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 3.6e-18 95.5 115 45.2
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 3.6e-18 95.5 115 45.2
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.2e-18 94.7 75 62.7
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 6.2e-18 94.7 142 43.7
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.1e-17 94.0 110 49.1
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.4e-17 93.6 112 43.8
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.4e-17 92.8 110 48.2
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 5.3e-17 91.7 111 47.7
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 1.2e-16 90.5 87 56.3
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 1.5e-16 90.1 75 60.0
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 9.9e-16 87.4 110 42.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 9.9e-16 87.4 84 51.2
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 9.9e-16 87.4 88 54.5
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.3e-15 87.0 75 60.0
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.8e-15 85.5 76 55.3
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 3.8e-15 85.5 108 45.4
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 4.9e-15 85.1 75 57.3
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 8.4e-15 84.3 75 57.3
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 5.4e-14 81.6 121 43.8
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 5.4e-14 81.6 76 52.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 7.9e-13 77.8 88 50.0
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 2.3e-12 76.3 113 41.6
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 4.3e-11 72.0 70 52.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 2.1e-10 69.7 72 50.0
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 4.8e-10 68.6 47 72.3
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.3e-09 65.1 75 48.0
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 7.6e-08 61.2 117 34.2
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.4e-06 56.2 76 43.4
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 2.4e-06 56.2 115 40.0


User provided reference genes

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