Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 3.1e-87 325.1 162 100.0
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 4.5e-30 135.2 112 71.4
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 9.4e-28 127.5 143 55.9
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.8e-26 123.2 143 55.2
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 3.0e-26 122.5 143 54.5
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 8.8e-26 120.9 109 65.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.7e-25 118.2 143 54.5
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 5.7e-25 118.2 146 52.7
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 9.7e-25 117.5 143 51.0
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 7.0e-23 111.3 130 52.3
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 9.1e-23 110.9 91 69.2
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 1.4e-18 97.1 144 45.8
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 8.8e-18 94.4 142 44.4
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 8.8e-18 94.4 112 51.8
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.2e-17 94.0 110 50.9
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.5e-17 93.6 146 45.2
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-17 93.6 144 44.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 1.5e-17 93.6 144 44.4
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.5e-17 93.6 112 50.9
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 1.5e-17 93.6 153 43.8
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 2.0e-17 93.2 136 47.1
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 2.6e-17 92.8 110 50.0
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 4.4e-17 92.0 111 53.2
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 7.5e-17 91.3 110 50.0
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.8e-17 90.9 110 50.9
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 9.8e-17 90.9 109 50.5
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 1.3e-16 90.5 110 50.9
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 1.3e-16 90.5 106 50.9
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 1.7e-16 90.1 107 50.5
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.7e-16 90.1 153 41.2
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.7e-16 90.1 142 44.4
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 2.2e-16 89.7 153 40.5
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 2.2e-16 89.7 111 49.5
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 2.2e-16 89.7 111 53.2
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 3.7e-16 89.0 141 42.6
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 8.3e-16 87.8 109 49.5
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.1e-15 87.4 110 49.1
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.1e-15 87.4 111 48.6
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.1e-15 87.4 111 51.4
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.4e-15 87.0 134 44.0
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.4e-15 87.0 134 44.0
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.4e-15 87.0 102 53.9
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 1.8e-15 86.7 112 51.8
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.4e-15 86.3 111 51.4
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 2.4e-15 86.3 144 38.9
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 3.1e-15 85.9 106 49.1
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 3.1e-15 85.9 106 49.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.1e-15 85.9 111 47.7
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 5.4e-15 85.1 130 43.8
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.4e-15 85.1 137 40.9
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.4e-15 85.1 111 50.5
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.4e-15 85.1 111 50.5
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 7.0e-15 84.7 154 38.3
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 7.0e-15 84.7 111 47.7
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.2e-14 84.0 111 46.8
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 1.2e-14 84.0 106 49.1
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 1.6e-14 83.6 111 46.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 1.6e-14 83.6 129 41.9
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 1.6e-14 83.6 115 48.7
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 2.7e-14 82.8 117 44.4
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 2.7e-14 82.8 112 47.3
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 3.5e-14 82.4 130 43.1
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 5.9e-14 81.6 161 39.8
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 5.9e-14 81.6 111 47.7
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 5.9e-14 81.6 111 46.8
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 7.7e-14 81.3 109 47.7
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.0e-13 80.9 145 38.6
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.0e-13 80.9 111 45.9
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.0e-13 80.9 115 45.2
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 1.0e-13 80.9 111 45.9
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 1.3e-13 80.5 100 51.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.7e-13 80.1 117 44.4
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.2e-13 79.7 107 46.7
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 2.9e-13 79.3 112 46.4
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.9e-13 79.3 139 41.7
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 3.8e-13 79.0 102 47.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 3.8e-13 79.0 148 38.5
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 5.0e-13 78.6 110 47.3
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 5.0e-13 78.6 105 48.6
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 6.5e-13 78.2 104 47.1
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 6.5e-13 78.2 111 45.9
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 8.5e-13 77.8 115 43.5
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.1e-12 77.4 111 43.2
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-12 77.4 130 41.5
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.9e-12 76.6 140 40.0
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 1.9e-12 76.6 107 45.8
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.9e-12 76.6 155 37.4
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 2.5e-12 76.3 107 45.8
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 3.2e-12 75.9 111 44.1
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 3.2e-12 75.9 111 44.1
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.2e-12 75.9 111 44.1
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.2e-12 75.9 111 44.1
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.2e-12 75.9 115 45.2
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 3.2e-12 75.9 111 45.9
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 5.5e-12 75.1 100 51.0
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 7.2e-12 74.7 107 44.9
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.2e-12 74.7 112 45.5
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 9.5e-12 74.3 104 45.2
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 1.2e-11 73.9 112 44.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 1.2e-11 73.9 112 44.6
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 1.6e-11 73.6 109 46.8
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 2.1e-11 73.2 110 42.7
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 2.7e-11 72.8 115 43.5
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 2.7e-11 72.8 111 44.1
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.7e-11 72.8 104 45.2
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 2.7e-11 72.8 105 46.7
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 3.6e-11 72.4 127 40.2
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 3.6e-11 72.4 63 65.1
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 4.7e-11 72.0 111 41.4
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.1e-11 71.6 99 44.4
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 8.0e-11 71.2 112 42.9
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.0e-10 70.9 62 59.7
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 1.8e-10 70.1 147 36.1
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 2.3e-10 69.7 116 44.0
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 3.0e-10 69.3 111 41.4
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.0e-10 69.3 111 42.3
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.0e-10 69.3 109 45.0
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 3.0e-10 69.3 109 45.0
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 4.0e-10 68.9 110 42.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 5.2e-10 68.6 100 44.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 5.2e-10 68.6 100 44.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 5.2e-10 68.6 105 44.8
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.8e-10 68.2 106 43.4
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 6.8e-10 68.2 112 43.8
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 4.4e-09 65.5 60 58.3
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.3e-08 63.9 105 40.0
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 1.3e-08 63.9 101 41.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 1.7e-08 63.5 112 42.9
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 3.7e-08 62.4 112 41.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.4e-07 60.5 100 42.0
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.2e-06 57.4 60 56.7
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 4.5e-06 55.5 110 38.2
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 4.5e-06 55.5 101 37.6
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.7e-06 54.7 75 48.0


User provided reference genes

Program Settings