Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.3e-159 566.2 264 100.0
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 5.5e-126 454.5 387 61.2
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 8.3e-66 254.6 204 58.3
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.6e-53 213.8 221 49.3
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 1.4e-49 200.7 387 33.9
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 4.9e-34 149.1 216 38.9
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 1.9e-33 147.1 229 37.1
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 2.1e-29 133.7 223 36.8
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 1.1e-28 131.3 222 36.9
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 2.4e-28 130.2 219 36.5
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 2.6e-27 126.7 247 34.8
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 2.2e-26 123.6 222 33.8
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.4e-25 120.9 222 36.9
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 2.4e-25 120.2 217 36.4
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 3.2e-25 119.8 228 34.6
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 4.2e-25 119.4 220 35.0
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 5.5e-25 119.0 221 34.4
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 7.1e-25 118.6 222 36.0
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 2.1e-24 117.1 225 38.2
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 1.8e-23 114.0 218 35.3
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.9e-23 112.8 219 33.8
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-22 111.3 220 36.4
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.5e-22 110.9 219 33.8
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 3.3e-22 109.8 219 34.7
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.3e-22 109.8 221 33.5
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 1.6e-21 107.5 219 32.9
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 2.1e-21 107.1 220 34.1
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 8.1e-21 105.1 219 35.2
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 1.1e-20 104.8 225 32.9
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.1e-20 104.8 219 33.3
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.1e-20 104.8 223 33.2
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.0e-20 102.8 219 32.0
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 5.3e-20 102.4 225 32.9
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.5e-19 100.9 219 32.0
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 7.6e-19 98.6 220 33.2
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 1.0e-18 98.2 136 41.9
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 1.3e-18 97.8 220 32.3
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 1.7e-18 97.4 210 34.8
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-17 94.4 133 41.4
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 1.9e-17 94.0 203 32.0
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 2.5e-17 93.6 227 32.6
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 7.1e-17 92.0 260 28.8
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 7.1e-17 92.0 260 28.8
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 2.1e-16 90.5 120 45.8
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.5e-16 89.7 180 34.4
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 6.0e-16 89.0 186 35.5
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 1.3e-15 87.8 208 32.2
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 3.0e-15 86.7 196 31.6
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 5.1e-15 85.9 128 39.1
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 5.1e-15 85.9 156 32.7
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.5e-14 83.6 177 33.3
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 7.4e-14 82.0 219 29.7
MELO3C010232.2 Cucumis melo HOM05D002420 ORTHO05D002422 4.8e-13 79.3 219 27.4
Oeu007441.1 Olea europaea HOM05D002420 ORTHO05D002422 4.8e-13 79.3 212 31.1
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 4.8e-13 79.3 121 38.0
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 1.1e-12 78.2 263 27.0
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-12 77.8 123 39.8
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 4.1e-12 76.3 144 35.4
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.9e-12 75.5 185 31.9
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 6.9e-12 75.5 116 36.2
Cc07_g09370 Coffea canephora HOM05D002420 ORTHO05D002422 9.0e-12 75.1 211 27.5
Potri.007G027300 Populus trichocarpa HOM05D002420 ORTHO05D002422 9.0e-12 75.1 208 29.8
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 1.2e-11 74.7 123 36.6
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.5e-11 74.3 211 25.6
Oeu054758.1 Olea europaea HOM05D002420 ORTHO05D002422 4.5e-11 72.8 231 28.6
Ciclev10020526m.g Citrus clementina HOM05D002420 ORTHO05D002422 5.9e-11 72.4 215 27.4
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 1.7e-10 70.9 211 25.1
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 2.2e-10 70.5 123 39.0
Cpa.g.sc42.22 Carica papaya HOM05D002420 ORTHO05D002422 2.2e-10 70.5 217 26.7
CAN.G929.25 Capsicum annuum HOM05D002420 ORTHO05D002422 2.9e-10 70.1 219 28.3
Sed0001582 Sechium edule HOM05D002420 ORTHO05D002422 2.9e-10 70.1 130 34.6
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 1.1e-09 68.2 224 25.4
EL10Ac8g18839 Beta vulgaris HOM05D002420 ORTHO05D002422 1.4e-09 67.8 220 25.5
AUR62003167 Chenopodium quinoa HOM05D002420 ORTHO05D002422 1.4e-09 67.8 206 28.6
Prupe.7G153000 Prunus persica HOM05D002420 ORTHO05D002422 1.4e-09 67.8 136 32.4
DCAR_004585 Daucus carota HOM05D001729 ORTHO05D001155 1.9e-09 67.4 204 33.3
Lsat_1_v5_gn_4_150760 Lactuca sativa HOM05D002420 ORTHO05D002422 1.9e-09 67.4 193 28.0
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 2.5e-09 67.0 126 31.7
Ah.09g231660 Amaranthus hybridus HOM05D002420 ORTHO05D002422 4.2e-09 66.2 218 24.8
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 5.5e-09 65.9 127 33.9
EL10Ac6g14933 Beta vulgaris HOM05D002420 ORTHO05D002422 5.5e-09 65.9 207 28.5
AUR62033032 Chenopodium quinoa HOM05D002420 ORTHO05D002422 5.5e-09 65.9 124 29.8
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 7.2e-09 65.5 219 24.7
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 7.2e-09 65.5 219 24.7
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 7.2e-09 65.5 218 26.1
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.2e-08 64.7 208 28.8
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 1.2e-08 64.7 126 34.1
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 1.2e-08 64.7 218 26.6
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 2.1e-08 63.9 209 28.2
Solyc02g062800.2 Solanum lycopersicum HOM05D002420 ORTHO05D002422 2.1e-08 63.9 142 30.3
Sopen02g013840 Solanum pennellii HOM05D002420 ORTHO05D002422 2.1e-08 63.9 210 26.2
AUR62040762 Chenopodium quinoa HOM05D002420 ORTHO05D002422 2.7e-08 63.5 124 29.8
PSO782G2883 Papaver somniferum HOM05D000664 ORTHO05D000491 3.6e-08 63.2 242 28.5
Sed0002351 Sechium edule HOM05D000007 ORTHO05D000039 3.6e-08 63.2 193 27.5
SGA_v2.0_scaffold34G13656 Striga asiatica HOM05D002420 ORTHO05D002422 3.6e-08 63.2 140 30.7
Aqoxy6G01076 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 7.9e-08 62.0 216 27.8
arahy.Tifrunner.gnm1.ann1.TS9750 Arachis hypogaea HOM05D002420 ORTHO05D002422 7.9e-08 62.0 140 27.1
CsaV3_4G005120 Cucumis sativus L. HOM05D002420 ORTHO05D002422 7.9e-08 62.0 136 32.4
FAN26G2215 Fragaria x ananassa HOM05D002420 ORTHO05D002422 7.9e-08 62.0 141 29.8
Gohir.A11G185000 Gossypium hirsutum HOM05D002420 ORTHO05D002422 1.0e-07 61.6 136 29.4
HanXRQChr14g0441221 Helianthus annuus HOM05D002420 ORTHO05D002422 1.0e-07 61.6 192 28.6
PSO478G1976 Papaver somniferum HOM05D000007 ORTHO05D000017 1.0e-07 61.6 146 26.7
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.0e-07 61.6 76 40.8
TAR375G1044 Trochodendron aralioides HOM05D007822 ORTHO05D009360 1.0e-07 61.6 76 44.7
DCAR_015611 Daucus carota HOM05D002420 ORTHO05D002422 1.3e-07 61.2 220 25.0
FvH4_1g13470 Fragaria vesca HOM05D002420 ORTHO05D002422 1.3e-07 61.2 141 29.8
FAN19G1320 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.3e-07 61.2 141 29.8
Nitab4.5_0003233g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.3e-07 61.2 137 32.1
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 1.8e-07 60.8 127 31.5
Thecc.01G037600 Theobroma cacao HOM05D002420 ORTHO05D002422 1.8e-07 60.8 204 27.0
GSVIVG01026445001 Vitis vinifera HOM05D002420 ORTHO05D002422 1.8e-07 60.8 213 23.5
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 2.3e-07 60.5 131 31.3
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 2.3e-07 60.5 126 31.0
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 2.3e-07 60.5 126 31.0
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 2.3e-07 60.5 126 31.0
Ciclev10005014m.g Citrus clementina HOM05D007162 ORTHO05D007631 2.3e-07 60.5 124 30.6
Atru.chr3.562 Acer truncatum HOM05D002420 ORTHO05D002422 3.9e-07 59.7 136 28.7
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 3.9e-07 59.7 126 31.0
Duzib187G1349 Durio zibethinus HOM05D002420 ORTHO05D002422 3.9e-07 59.7 136 29.4
Gohir.D11G191500 Gossypium hirsutum HOM05D002420 ORTHO05D002422 3.9e-07 59.7 136 28.7
Gorai.007G204100 Gossypium raimondii HOM05D002420 ORTHO05D002422 3.9e-07 59.7 136 28.7
Nitab4.5_0000136g0430 Nicotiana tabacum HOM05D002420 ORTHO05D002422 3.9e-07 59.7 137 31.4
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 3.9e-07 59.7 126 33.3
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 5.1e-07 59.3 64 48.4
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 5.1e-07 59.3 126 30.2
Sabra10G0115000 Salix brachista HOM05D007162 ORTHO05D007631 5.1e-07 59.3 126 30.2
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 5.1e-07 59.3 127 31.5
BraA02t08804Z Brassica rapa HOM05D007162 ORTHO05D007631 6.7e-07 58.9 126 29.4
Manes.18G080566 Manihot esculenta HOM05D002420 ORTHO05D002422 6.7e-07 58.9 140 30.0
RcHm_v2.0_Chr2g0101851 Rosa chinensis HOM05D002420 ORTHO05D002422 6.7e-07 58.9 144 28.5
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 6.7e-07 58.9 217 24.9
FAN28G0805 Fragaria x ananassa HOM05D002420 ORTHO05D002422 8.7e-07 58.5 119 31.1
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.1e-06 58.2 131 30.5
CiPaw.01G207700 Carya illinoinensis HOM05D000664 ORTHO05D000491 1.1e-06 58.2 223 22.0
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 1.1e-06 58.2 126 30.2
FAN23G1316 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.1e-06 58.2 141 29.1
FAN23G2135 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.1e-06 58.2 141 29.1
PSO566G0320 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-06 58.2 135 36.3
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 1.5e-06 57.8 126 29.4
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 1.5e-06 57.8 222 24.3
Eucgr.I02456 Eucalyptus grandis HOM05D002420 ORTHO05D002422 1.5e-06 57.8 208 23.6
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.5e-06 57.8 126 31.7
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 1.5e-06 57.8 126 31.7
PSO333G0040 Papaver somniferum HOM05D008326 ORTHO05D001155 1.5e-06 57.8 198 26.3
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 1.5e-06 57.8 126 30.2
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 1.9e-06 57.4 141 29.8
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 1.9e-06 57.4 127 30.7
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 1.9e-06 57.4 127 30.7
SGA_v2.0_scaffold47G17662 Striga asiatica HOM05D002420 ORTHO05D002422 1.9e-06 57.4 213 25.8
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 2.5e-06 57.0 126 29.4
AL8G23420 Arabidopsis lyrata HOM05D007162 ORTHO05D007631 3.3e-06 56.6 126 30.2
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 3.3e-06 56.6 126 30.2
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 4.3e-06 56.2 132 33.3
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 4.3e-06 56.2 126 30.2
Manes.03G207900 Manihot esculenta HOM05D007162 ORTHO05D007631 4.3e-06 56.2 126 27.8
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 4.3e-06 56.2 126 28.6
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 4.3e-06 56.2 126 29.4
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 4.3e-06 56.2 126 28.6
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 5.7e-06 55.8 127 29.9
Lalb_Chr15g0089091 Lupinus albus HOM05D007162 ORTHO05D007631 5.7e-06 55.8 126 28.6
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 5.7e-06 55.8 123 30.9
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 5.7e-06 55.8 129 28.7
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 7.4e-06 55.5 128 27.3
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 7.4e-06 55.5 126 27.8
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 7.4e-06 55.5 129 27.9
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 7.4e-06 55.5 126 29.4
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 9.7e-06 55.1 129 27.9
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 9.7e-06 55.1 87 42.5
Carub.0008s0947 Capsella rubella HOM05D007162 ORTHO05D007631 9.7e-06 55.1 126 30.2
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 9.7e-06 55.1 126 27.0
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 9.7e-06 55.1 123 29.3


User provided reference genes

Program Settings