Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 2.5e-125 452.2 243 100.0
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 8.1e-84 314.3 272 69.1
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 2.2e-65 253.1 237 61.6
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.9e-64 250.0 221 67.0
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 3.2e-64 249.2 237 62.0
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 1.6e-63 246.9 222 65.3
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.6e-63 246.9 237 63.3
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 2.7e-63 246.1 203 68.0
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 3.6e-63 245.7 242 61.6
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 7.9e-63 244.6 178 75.8
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 7.9e-63 244.6 210 63.8
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 1.4e-62 243.8 234 62.0
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.4e-62 243.8 229 64.2
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.9e-62 242.3 175 74.3
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 2.0e-61 240.0 186 69.9
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 2.5e-61 239.6 192 67.2
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 2.5e-61 239.6 205 64.9
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 1.3e-60 237.3 193 69.9
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.7e-60 236.9 193 69.9
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 1.7e-60 236.9 217 64.1
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 2.8e-60 236.1 226 63.7
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.7e-60 235.7 236 60.2
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 4.8e-60 235.3 237 58.2
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 4.8e-60 235.3 175 72.0
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 4.8e-60 235.3 185 68.6
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 6.3e-60 235.0 234 60.3
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 6.3e-60 235.0 236 60.2
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 1.1e-59 234.2 237 58.6
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 1.4e-59 233.8 186 72.0
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 1.4e-59 233.8 237 58.2
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.4e-59 233.8 216 63.9
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 1.8e-59 233.4 230 62.2
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 3.1e-59 232.6 237 59.5
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 4.1e-59 232.3 175 71.4
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 6.9e-59 231.5 236 59.3
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 9.1e-59 231.1 237 59.1
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 1.2e-58 230.7 177 74.0
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.2e-58 230.7 237 58.6
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 1.2e-58 230.7 237 58.6
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 1.5e-58 230.3 237 60.8
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 3.4e-58 229.2 237 58.2
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 4.5e-58 228.8 260 56.2
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 7.7e-58 228.0 230 59.6
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.0e-57 227.6 237 57.8
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 1.3e-57 227.3 235 58.3
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 1.3e-57 227.3 177 71.8
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 1.7e-57 226.9 226 61.5
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 6.5e-57 224.9 173 72.8
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 6.5e-57 224.9 242 57.9
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.1e-56 224.2 212 60.4
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.4e-56 223.8 195 64.1
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 1.9e-56 223.4 177 71.8
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 1.9e-56 223.4 186 66.7
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 2.5e-56 223.0 183 68.3
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 2.5e-56 223.0 218 61.9
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 3.2e-56 222.6 172 72.7
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 3.2e-56 222.6 226 58.0
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 4.2e-56 222.2 222 60.8
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 4.2e-56 222.2 232 59.5
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 7.2e-56 221.5 229 59.0
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 1.2e-55 220.7 172 72.1
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 1.2e-55 220.7 208 60.1
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 1.6e-55 220.3 240 57.5
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 2.1e-55 219.9 174 67.8
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 2.7e-55 219.5 170 70.0
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 3.6e-55 219.2 207 60.4
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.6e-55 219.2 228 57.5
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 7.9e-55 218.0 202 62.9
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 1.0e-54 217.6 211 59.7
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.4e-54 217.2 161 72.7
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 1.8e-54 216.9 163 73.0
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 1.8e-54 216.9 163 73.0
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 1.8e-54 216.9 163 73.0
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 1.8e-54 216.9 247 55.9
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 2.3e-54 216.5 178 66.9
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 2.3e-54 216.5 229 55.5
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 2.3e-54 216.5 166 69.3
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 2.3e-54 216.5 247 54.7
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 2.3e-54 216.5 233 55.4
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 3.9e-54 215.7 178 67.4
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 5.1e-54 215.3 168 68.5
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 8.8e-54 214.5 236 55.9
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 1.1e-53 214.2 236 55.9
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.1e-53 214.2 235 55.3
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.1e-53 214.2 166 69.3
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 1.1e-53 214.2 161 68.3
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 1.5e-53 213.8 236 55.9
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 2.0e-53 213.4 235 55.3
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 9.7e-53 211.1 226 54.9
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 2.2e-52 209.9 227 56.4
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 2.8e-52 209.5 185 65.4
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 8.2e-52 208.0 229 56.8
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 5.3e-51 205.3 237 51.5
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 7.0e-51 204.9 227 55.5
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.6e-50 203.0 174 67.2
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 7.7e-50 201.4 237 51.1
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 1.3e-49 200.7 181 64.6
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 2.9e-49 199.5 163 66.3
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.5e-48 196.4 129 79.8
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 2.5e-48 196.4 238 53.8
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 5.5e-48 195.3 231 51.1
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.1e-47 193.4 149 71.1
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 1.0e-46 191.0 167 63.5
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 2.3e-46 189.9 128 77.3
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 3.9e-46 189.1 173 60.1
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 8.8e-46 188.0 129 74.4
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 4.4e-45 185.7 138 72.5
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 5.7e-45 185.3 237 47.7
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.3e-44 184.1 117 80.3
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 9.1e-43 177.9 130 72.3
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 3.5e-42 176.0 145 62.8
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 6.5e-41 171.8 229 52.4
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 1.6e-39 167.2 247 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 3.6e-39 166.0 179 53.6
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 6.8e-38 161.8 161 61.5
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 6.8e-38 161.8 176 52.3
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 4.4e-37 159.1 131 70.2
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 9.7e-37 157.9 182 49.5
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 4.8e-36 155.6 162 56.2
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 1.5e-32 144.1 229 45.4
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 6.3e-28 128.6 162 50.6
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 4.1e-27 125.9 149 53.7
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.0e-22 111.3 62 80.6
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 1.4e-22 110.9 167 40.7
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 3.0e-22 109.8 122 53.3
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.3e-17 93.6 99 56.6
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.2e-13 81.3 201 34.3
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 3.2e-11 73.2 104 44.2
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 5.4e-11 72.4 90 51.1
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.1e-06 58.2 53 77.4
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 1.8e-06 57.4 71 50.7
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 3.1e-06 56.6 108 46.3


User provided reference genes

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